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The map label for this gene is pafC [H]

Identifier: 183219664

GI number: 183219664

Start: 229845

End: 230798

Strand: Reverse

Name: pafC [H]

Synonym: LEPBI_I0239

Alternate gene names: 183219664

Gene position: 230798-229845 (Counterclockwise)

Preceding gene: 183219665

Following gene: 183219663

Centisome position: 6.41

GC content: 39.1

Gene sequence:

>954_bases
ATGAACCCTTCTACCGCTCGGGCCGCTTCTAAACTCAATTTAATCCGCCTTCTGGCTTCTCATCCAGAAGGTTTATCATT
AGAAGAAATCCAAGGAGTGACCGGGCACAAATCCATCGCCTCTCTCAAAAAAGATTTGGGAGAGTTGTATATGATTGAGA
TGTATCCCTATTCTCCGACCGATGCTGTAGACTTAGACTTTGATGGGGACAAGGTGAAAATCAGACTCCCCATTGCAGTT
GATTCAGCGCTTCCGTTATCACCCAAAGAATGGGCCGCTTTACGATCGTTACTCCTTTCTGAAAAAGGCCAAGGCGGAGA
GATCCGGCAATCCATCTTAAAAAAAATTGATTCTGTCTTACCATCTGGCGAATGGTCACCTCATCAAAAAACAAAAAAAA
TGGTTCAAGAAGCCATTCACTCCAAAAAAATACTAACAATTGTTTATTGGAAACGGAACACAAAAGAAAAAGAAACAAGA
ACACTTGCTCCTTGGTTATTACTCGAAGAAAATGATTCTTACCTTTTGGCATATGATTTAAAAAAAGAGGGGTTTCGTTC
CTTTCGATTGGATTTTATTTTGGATATCACAATCACTGATTTGGAATACCCAAACTTACCTGAAACCGCATCTGAGTTTT
TACAAGGGTTCAAACAAAAATTTGAAACAAATTCAGATCCTGAAACGAATGTTACCTTATGGGTCACAGACTCTGCTTCG
TATCATTTGAGTTTAAAACTCCCTCTCAATGAAACAGGAAACGTAAAACAAATCCAAAACACAACCTTCCGAGAATTCCA
AACTCCCTTGCGAGATAAAAATTGGCTCATCCAAACGATACTTGGATATGGACCTTCCATTCTTGTGTCCGAACCAAATG
AAATCAAAGAATCCATCAGACTGCATTTACAATCCATTTCCCTTTCTAAAGAAAACAAGTCGATAGAAACGTAA

Upstream 100 bases:

>100_bases
GCCAAAGATTGACTGGTGGGCACCTCAAAGCAAAAAACATCGAAAAACAATCTTTATGCGCATCAAACGCAAAAGAACTA
AAGGTGATTCTCGAAGTTTA

Downstream 100 bases:

>100_bases
GTTGGTTCTTTTGCAAACGATTGCACATGCAAAGATTAACATTGGTTTGATGATTCCTTATAAAAGGGAAGATGGACTCC
ATGAAATCCGAAGTGTCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MNPSTARAASKLNLIRLLASHPEGLSLEEIQGVTGHKSIASLKKDLGELYMIEMYPYSPTDAVDLDFDGDKVKIRLPIAV
DSALPLSPKEWAALRSLLLSEKGQGGEIRQSILKKIDSVLPSGEWSPHQKTKKMVQEAIHSKKILTIVYWKRNTKEKETR
TLAPWLLLEENDSYLLAYDLKKEGFRSFRLDFILDITITDLEYPNLPETASEFLQGFKQKFETNSDPETNVTLWVTDSAS
YHLSLKLPLNETGNVKQIQNTTFREFQTPLRDKNWLIQTILGYGPSILVSEPNEIKESIRLHLQSISLSKENKSIET

Sequences:

>Translated_317_residues
MNPSTARAASKLNLIRLLASHPEGLSLEEIQGVTGHKSIASLKKDLGELYMIEMYPYSPTDAVDLDFDGDKVKIRLPIAV
DSALPLSPKEWAALRSLLLSEKGQGGEIRQSILKKIDSVLPSGEWSPHQKTKKMVQEAIHSKKILTIVYWKRNTKEKETR
TLAPWLLLEENDSYLLAYDLKKEGFRSFRLDFILDITITDLEYPNLPETASEFLQGFKQKFETNSDPETNVTLWVTDSAS
YHLSLKLPLNETGNVKQIQNTTFREFQTPLRDKNWLIQTILGYGPSILVSEPNEIKESIRLHLQSISLSKENKSIET
>Mature_317_residues
MNPSTARAASKLNLIRLLASHPEGLSLEEIQGVTGHKSIASLKKDLGELYMIEMYPYSPTDAVDLDFDGDKVKIRLPIAV
DSALPLSPKEWAALRSLLLSEKGQGGEIRQSILKKIDSVLPSGEWSPHQKTKKMVQEAIHSKKILTIVYWKRNTKEKETR
TLAPWLLLEENDSYLLAYDLKKEGFRSFRLDFILDITITDLEYPNLPETASEFLQGFKQKFETNSDPETNVTLWVTDSAS
YHLSLKLPLNETGNVKQIQNTTFREFQTPLRDKNWLIQTILGYGPSILVSEPNEIKESIRLHLQSISLSKENKSIET

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36012; Mature: 36012

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSTARAASKLNLIRLLASHPEGLSLEEIQGVTGHKSIASLKKDLGELYMIEMYPYSPT
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCC
DAVDLDFDGDKVKIRLPIAVDSALPLSPKEWAALRSLLLSEKGQGGEIRQSILKKIDSVL
CEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
PSGEWSPHQKTKKMVQEAIHSKKILTIVYWKRNTKEKETRTLAPWLLLEENDSYLLAYDL
CCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHEECCEEEEECCCCEEEEEEC
KKEGFRSFRLDFILDITITDLEYPNLPETASEFLQGFKQKFETNSDPETNVTLWVTDSAS
CHHCCHHEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
YHLSLKLPLNETGNVKQIQNTTFREFQTPLRDKNWLIQTILGYGPSILVSEPNEIKESIR
EEEEEEECCCCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHH
LHLQSISLSKENKSIET
HHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNPSTARAASKLNLIRLLASHPEGLSLEEIQGVTGHKSIASLKKDLGELYMIEMYPYSPT
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCC
DAVDLDFDGDKVKIRLPIAVDSALPLSPKEWAALRSLLLSEKGQGGEIRQSILKKIDSVL
CEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
PSGEWSPHQKTKKMVQEAIHSKKILTIVYWKRNTKEKETRTLAPWLLLEENDSYLLAYDL
CCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHEECCEEEEECCCCEEEEEEC
KKEGFRSFRLDFILDITITDLEYPNLPETASEFLQGFKQKFETNSDPETNVTLWVTDSAS
CHHCCHHEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
YHLSLKLPLNETGNVKQIQNTTFREFQTPLRDKNWLIQTILGYGPSILVSEPNEIKESIR
EEEEEEECCCCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHH
LHLQSISLSKENKSIET
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]