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The map label for this gene is rnpA

Identifier: 18311641

GI number: 18311641

Start: 3030237

End: 3030614

Strand: Reverse

Name: rnpA

Synonym: CPE2659

Alternate gene names: 18311641

Gene position: 3030614-3030237 (Counterclockwise)

Preceding gene: 18311642

Following gene: 18311640

Centisome position: 99.97

GC content: 30.69

Gene sequence:

>378_bases
ATGTTACTAAGTTTAAGAAAGAACAATGAGTTTAGAACAGTTTATAGAAGAGGAAAGTCTTATGCTAATGACCTGCTAGT
TCTTTATGTTTATCCTAACAGAAAAAATGTTACAAAGGATGGAGAACGTTTCAATAAGGTAGGAGTTTCAGTTAGCAAGA
AGGTTGGAAAAAGTGTAGTTAGAAGTAGAGTTAAAAGACTTATACTTGAAAATTACAGACTTAATTCTAGTGAACTTAAA
GAAGGCTATGACTTTGTGTTTATTGCTAGAGTTGCTATAAACGGTAAGGATTTTAAGCAAGTAGGGAAAGCCATGAATAA
TTTAATAAAAAAGGCAGGTCTACGTGATAATGAAAAAATTGTTCATAGTAATGATTAA

Upstream 100 bases:

>100_bases
GAGAAGAAGACAAAAAGGTAGAAAAAGATTAACAGCATAAGGGCCGCATTTTGTGGCCTTTTTCTGCACTAAAAAGCAGA
AAAAAGGAGAGCAAATTTAA

Downstream 100 bases:

>100_bases
ATTCTATAGAAAATATATTTCACCTTTAAAGAGGCCTTGTTGCAGATTTTATCCAACTTGTTCTCAATATGCACTAGAAG
CAATACAAAAGTATGGTGCT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MLLSLRKNNEFRTVYRRGKSYANDLLVLYVYPNRKNVTKDGERFNKVGVSVSKKVGKSVVRSRVKRLILENYRLNSSELK
EGYDFVFIARVAINGKDFKQVGKAMNNLIKKAGLRDNEKIVHSND

Sequences:

>Translated_125_residues
MLLSLRKNNEFRTVYRRGKSYANDLLVLYVYPNRKNVTKDGERFNKVGVSVSKKVGKSVVRSRVKRLILENYRLNSSELK
EGYDFVFIARVAINGKDFKQVGKAMNNLIKKAGLRDNEKIVHSND
>Mature_125_residues
MLLSLRKNNEFRTVYRRGKSYANDLLVLYVYPNRKNVTKDGERFNKVGVSVSKKVGKSVVRSRVKRLILENYRLNSSELK
EGYDFVFIARVAINGKDFKQVGKAMNNLIKKAGLRDNEKIVHSND

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CLOP1 (Q0TLZ0)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_697350.1
- ProteinModelPortal:   Q0TLZ0
- SMR:   Q0TLZ0
- STRING:   Q0TLZ0
- GeneID:   4202614
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_2996
- TIGR:   CPF_2996
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   CAEMERV
- ProtClustDB:   PRK00499
- BioCyc:   CPER195103:CPF_2996-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14440; Mature: 14440

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSLRKNNEFRTVYRRGKSYANDLLVLYVYPNRKNVTKDGERFNKVGVSVSKKVGKSVV
CEEECCCCCHHHHHHHHCHHCCCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHH
RSRVKRLILENYRLNSSELKEGYDFVFIARVAINGKDFKQVGKAMNNLIKKAGLRDNEKI
HHHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
VHSND
CCCCC
>Mature Secondary Structure
MLLSLRKNNEFRTVYRRGKSYANDLLVLYVYPNRKNVTKDGERFNKVGVSVSKKVGKSVV
CEEECCCCCHHHHHHHHCHHCCCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHH
RSRVKRLILENYRLNSSELKEGYDFVFIARVAINGKDFKQVGKAMNNLIKKAGLRDNEKI
HHHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
VHSND
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA