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The map label for this gene is ybgA [H]

Identifier: 18311609

GI number: 18311609

Start: 3002476

End: 3003201

Strand: Reverse

Name: ybgA [H]

Synonym: CPE2627

Alternate gene names: 18311609

Gene position: 3003201-3002476 (Counterclockwise)

Preceding gene: 18311610

Following gene: 18311604

Centisome position: 99.07

GC content: 29.06

Gene sequence:

>726_bases
ATGTTTAAGAGAAGCAGGGGCATAGCCCTGTATCATCAATTAGAAACAGAGCTAATTGATCTTATAAATAGCGGAGAACT
TAAGGAAAATGATAAGTTACCATCTGAAAGAGAATTATGTGAGCAATATAATGTTAGTAGAACAACAGCTAGGCAAGCTA
TTGGAGAATTAGAAAGAAAAGAGTATGTATATAAGGTCCATGGAAAGGGAACTTTTATATCTCCTAAAGTGTATAAACAA
CAATTATTAAAATTTTATAGTTTTACTGAAGAAATGAAAAAGCTTGGGAAAAATCCATCTTCAAAAATATTATCCTTTGA
TTTAATAAGAGCTGACAATAAGATTTCTGAAAAATTAAAAGTGGAAGAAAACTCACTGGTATATAAGATAGTAAGACTAA
GAATAGCAGATGAAGTTCCAATGATGGTAGAGTGTACTTATTTACCTGAATATAGATTTATTGATTTGAAAGAAAAGATG
CTTAAAGAAAAGCCTATGTATGATATATTTAGAGAAGTCTATAATGTTAGTCTAACTAAGGCTAAGGAAAGTTTTAAACC
AATATTAATTTCAAAGAGTGATTCAAAATTATTAAATGTGGAAGATGGTACAGCTGCAATGAGAATTGAAAGAGTTACCT
TTGAAAATGAAAGAGTTATAGAGTATACAGTAAGTGTTTCAAGAGGAGATAAATTTGAATATACTGTAGTTTTAGAAGAA
GATTAA

Upstream 100 bases:

>100_bases
TATATACTGTGAGTTTATGCTTTATAGAGAAAAACATTGAAAAAAAATAGTAAATATGATAACACTATAAATAGTATTAT
TAGAATTTAGGGGTGGAAGA

Downstream 100 bases:

>100_bases
TAAAGTAAAGAGACATCAAAAAAATTGATGTCTCTTTTATATATAAAATTAAATAATTAAGCTTTACCATTACTACCACA
AAGAAGAATCTTGTGTTCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MFKRSRGIALYHQLETELIDLINSGELKENDKLPSERELCEQYNVSRTTARQAIGELERKEYVYKVHGKGTFISPKVYKQ
QLLKFYSFTEEMKKLGKNPSSKILSFDLIRADNKISEKLKVEENSLVYKIVRLRIADEVPMMVECTYLPEYRFIDLKEKM
LKEKPMYDIFREVYNVSLTKAKESFKPILISKSDSKLLNVEDGTAAMRIERVTFENERVIEYTVSVSRGDKFEYTVVLEE
D

Sequences:

>Translated_241_residues
MFKRSRGIALYHQLETELIDLINSGELKENDKLPSERELCEQYNVSRTTARQAIGELERKEYVYKVHGKGTFISPKVYKQ
QLLKFYSFTEEMKKLGKNPSSKILSFDLIRADNKISEKLKVEENSLVYKIVRLRIADEVPMMVECTYLPEYRFIDLKEKM
LKEKPMYDIFREVYNVSLTKAKESFKPILISKSDSKLLNVEDGTAAMRIERVTFENERVIEYTVSVSRGDKFEYTVVLEE
D
>Mature_241_residues
MFKRSRGIALYHQLETELIDLINSGELKENDKLPSERELCEQYNVSRTTARQAIGELERKEYVYKVHGKGTFISPKVYKQ
QLLKFYSFTEEMKKLGKNPSSKILSFDLIRADNKISEKLKVEENSLVYKIVRLRIADEVPMMVECTYLPEYRFIDLKEKM
LKEKPMYDIFREVYNVSLTKAKESFKPILISKSDSKLLNVEDGTAAMRIERVTFENERVIEYTVSVSRGDKFEYTVVLEE
D

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=228, Percent_Identity=27.1929824561404, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=26.4069264069264, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=26.7605633802817, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788418, Length=232, Percent_Identity=24.5689655172414, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28316; Mature: 28316

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRSRGIALYHQLETELIDLINSGELKENDKLPSERELCEQYNVSRTTARQAIGELERK
CCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
EYVYKVHGKGTFISPKVYKQQLLKFYSFTEEMKKLGKNPSSKILSFDLIRADNKISEKLK
CEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCHHHHHHC
VEENSLVYKIVRLRIADEVPMMVECTYLPEYRFIDLKEKMLKEKPMYDIFREVYNVSLTK
CCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEECHHHHHHHCCCHHHHHHHHHCCHHHH
AKESFKPILISKSDSKLLNVEDGTAAMRIERVTFENERVIEYTVSVSRGDKFEYTVVLEE
HHHCCCCEEEECCCCCEEEECCCCEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEEEEC
D
C
>Mature Secondary Structure
MFKRSRGIALYHQLETELIDLINSGELKENDKLPSERELCEQYNVSRTTARQAIGELERK
CCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
EYVYKVHGKGTFISPKVYKQQLLKFYSFTEEMKKLGKNPSSKILSFDLIRADNKISEKLK
CEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCHHHHHHC
VEENSLVYKIVRLRIADEVPMMVECTYLPEYRFIDLKEKMLKEKPMYDIFREVYNVSLTK
CCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEECHHHHHHHCCCHHHHHHHHHCCHHHH
AKESFKPILISKSDSKLLNVEDGTAAMRIERVTFENERVIEYTVSVSRGDKFEYTVVLEE
HHHCCCCEEEECCCCCEEEECCCCEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEEEEC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]