BacMap

Definition	Clostridium perfringens str. 13, complete genome.
Accession	NC_003366
Length	3,031,430

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The map label for this gene is yhxC [H]

Identifier: 18311580

GI number: 18311580

Start: 2976653

End: 2977543

Strand: Direct

Name: yhxC [H]

Synonym: CPE2598

Alternate gene names: 18311580

Gene position: 2976653-2977543 (Clockwise)

Preceding gene: 18311579

Following gene: 18311589

Centisome position: 98.19

GC content: 33.22

Gene sequence:

>891_bases
ATGAATCCATATTGTGATAATAGTATAAACTTTGAAAAGTTGCCAAAGAAATTCCCACCTCAACACCAATCAGTTCAACC
TGGAATAGAATCAATAATGGTTCCTAGTCCTATATTTGATAATCCAGATTATAAGGGCAGTGGAAAATTAAAAGGAAAAT
CAGTTCTTATTACTGGTGGCGATAGTGGAATTGGTAGAGCAGTTTCTATAGCCTTTGCAAAAGAAGGAGCAAATATTGTA
ATATCTTATCTTTATGAAAATGATGATGCTGAAACCACAAAGAAATACGTAGAAAAGTATGGTGGAAAATGCTACTTAGT
TCCTGGTGATATATCTAATAAAAACTTCTGTGAAAAATTAGTTAGATTTACAGTAGAAACTTTAGGTGGCATAGATGTTT
TAATAAATAATGCTGGGGTTCAATTCCCTCAAAATAATATAAATTGTATTTCACAAGAACAACTTGAATTAACATTTAAA
ATAAATATTTTTTCTATGTTCTATCTTACACAAGAAGCTTTAAAATACATGAAAAGAGGAAGTACAATAGTAAATACTAC
CTCTGTTACTGCTTACCAAGGTAAAGAAAATCTCATAGATTACTCCTCAACCAAAGGGGCTGTAGTTACATTTACAAGAT
CACTTTCACAATCAATCGTAAACAAGGGAATAAGAGTTAATGCCGTAGCTCCAGGTCCTATTTGGACTCCTCTTATAGTA
TCAAGTTTTTCAGAGGAAGAAGTAGCTAACTTTGGATCTGATGTTCCAATGAAACGTGCTGGCCAACCTTTTGAACTTGC
ACCAGCATATGTCTACTTAGCATCTGATGATTCCTCCTACGTAACAGGACAAGTTCTTCATGTAAATGGTGGAACTATAG
TAGATAGTTAA

Upstream 100 bases:

>100_bases
GATTTTAATTATTAAAAAATTGAAATTCTCAATATAAAATCACAAATACAATTATCTCTTCATAAAATAACTAGTATTAT
AAATACTTAAGGAGTATATA

Downstream 100 bases:

>100_bases
AAACTTTATATAAAAAATAAGCCTGTTTTAAATAAAAAACAGGCTTATTTTAATTCTATTTATTATGCGATTCTCTGTAT
TAGTATTAAGTAAGGTTTTT

Product: oxidoreductase

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNPYCDNSINFEKLPKKFPPQHQSVQPGIESIMVPSPIFDNPDYKGSGKLKGKSVLITGGDSGIGRAVSIAFAKEGANIV
ISYLYENDDAETTKKYVEKYGGKCYLVPGDISNKNFCEKLVRFTVETLGGIDVLINNAGVQFPQNNINCISQEQLELTFK
INIFSMFYLTQEALKYMKRGSTIVNTTSVTAYQGKENLIDYSSTKGAVVTFTRSLSQSIVNKGIRVNAVAPGPIWTPLIV
SSFSEEEVANFGSDVPMKRAGQPFELAPAYVYLASDDSSYVTGQVLHVNGGTIVDS

Sequences:

>Translated_296_residues
MNPYCDNSINFEKLPKKFPPQHQSVQPGIESIMVPSPIFDNPDYKGSGKLKGKSVLITGGDSGIGRAVSIAFAKEGANIV
ISYLYENDDAETTKKYVEKYGGKCYLVPGDISNKNFCEKLVRFTVETLGGIDVLINNAGVQFPQNNINCISQEQLELTFK
INIFSMFYLTQEALKYMKRGSTIVNTTSVTAYQGKENLIDYSSTKGAVVTFTRSLSQSIVNKGIRVNAVAPGPIWTPLIV
SSFSEEEVANFGSDVPMKRAGQPFELAPAYVYLASDDSSYVTGQVLHVNGGTIVDS
>Mature_296_residues
MNPYCDNSINFEKLPKKFPPQHQSVQPGIESIMVPSPIFDNPDYKGSGKLKGKSVLITGGDSGIGRAVSIAFAKEGANIV
ISYLYENDDAETTKKYVEKYGGKCYLVPGDISNKNFCEKLVRFTVETLGGIDVLINNAGVQFPQNNINCISQEQLELTFK
INIFSMFYLTQEALKYMKRGSTIVNTTSVTAYQGKENLIDYSSTKGAVVTFTRSLSQSIVNKGIRVNAVAPGPIWTPLIV
SSFSEEEVANFGSDVPMKRAGQPFELAPAYVYLASDDSSYVTGQVLHVNGGTIVDS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=30.0429184549356, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=28.740157480315, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=32.1428571428571, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=28.2157676348548, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=29.0441176470588, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=29.1828793774319, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=28.2945736434109, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=30.5220883534137, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=29.0322580645161, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=28.0952380952381, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=27.2357723577236, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=26.8482490272374, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=26.9430051813472, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.9278350515464, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=25.1937984496124, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=27.4611398963731, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=139, Percent_Identity=28.7769784172662, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=27.3170731707317, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40807363, Length=185, Percent_Identity=27.5675675675676, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=277, Percent_Identity=48.014440433213, Blast_Score=275, Evalue=3e-75,
Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=34.297520661157, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.3886639676113, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=31.6872427983539, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=33.7349397590361, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=31.7647058823529, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=29.4117647058824, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788459, Length=240, Percent_Identity=30.4166666666667, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.0322580645161, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=29.0983606557377, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=28.3464566929134, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=22.8915662650602, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787545, Length=252, Percent_Identity=24.2063492063492, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=229, Percent_Identity=28.3842794759825, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=34.2741935483871, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=32.183908045977, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=32.9501915708812, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=29.6, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=29.9595141700405, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=34.1085271317829, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=29.6992481203008, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=32.5757575757576, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=28.735632183908, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30.3846153846154, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=30.6513409961686, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=28.735632183908, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=29.5880149812734, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=28.3524904214559, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=29.5454545454545, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=30.4182509505703, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=28.125, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=28.8389513108614, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=28.1368821292776, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=34.7593582887701, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=29.1666666666667, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=268, Percent_Identity=27.2388059701493, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=28.9795918367347, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=29.5719844357977, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=29.3877551020408, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.4878048780488, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=28.0155642023346, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=30.1587301587302, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=201, Percent_Identity=28.8557213930348, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=188, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=28.1124497991968, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=253, Percent_Identity=27.6679841897233, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=26.2886597938144, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=24.1025641025641, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=218, Percent_Identity=27.5229357798165, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=232, Percent_Identity=31.0344827586207, Blast_Score=76, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=256, Percent_Identity=25, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=26.6932270916335, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.6032388663968, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=32.7935222672065, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.8, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.6772908366534, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=28.9156626506024, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639444, Length=263, Percent_Identity=30.0380228136882, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=36, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=26.8482490272374, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=27.5720164609054, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364892, Length=178, Percent_Identity=29.7752808988764, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640492, Length=175, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=27.536231884058, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24584748, Length=199, Percent_Identity=26.6331658291457, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=30.3482587064677, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32307; Mature: 32307

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPYCDNSINFEKLPKKFPPQHQSVQPGIESIMVPSPIFDNPDYKGSGKLKGKSVLITGG
CCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEEEECC
DSGIGRAVSIAFAKEGANIVISYLYENDDAETTKKYVEKYGGKCYLVPGDISNKNFCEKL
CCCCCCEEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH
VRFTVETLGGIDVLINNAGVQFPQNNINCISQEQLELTFKINIFSMFYLTQEALKYMKRG
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHCC
STIVNTTSVTAYQGKENLIDYSSTKGAVVTFTRSLSQSIVNKGIRVNAVAPGPIWTPLIV
CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCEEEEEECCCCCHHHHHH
SSFSEEEVANFGSDVPMKRAGQPFELAPAYVYLASDDSSYVTGQVLHVNGGTIVDS
HCCCHHHHHHCCCCCCHHHCCCCCEECCEEEEEECCCCCEEEEEEEEECCCEEECC
>Mature Secondary Structure
MNPYCDNSINFEKLPKKFPPQHQSVQPGIESIMVPSPIFDNPDYKGSGKLKGKSVLITGG
CCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEEEECC
DSGIGRAVSIAFAKEGANIVISYLYENDDAETTKKYVEKYGGKCYLVPGDISNKNFCEKL
CCCCCCEEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH
VRFTVETLGGIDVLINNAGVQFPQNNINCISQEQLELTFKINIFSMFYLTQEALKYMKRG
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHCC
STIVNTTSVTAYQGKENLIDYSSTKGAVVTFTRSLSQSIVNKGIRVNAVAPGPIWTPLIV
CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCEEEEEECCCCCHHHHHH
SSFSEEEVANFGSDVPMKRAGQPFELAPAYVYLASDDSSYVTGQVLHVNGGTIVDS
HCCCHHHHHHCCCCCCHHHCCCCCEECCEEEEEECCCCCEEEEEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 8196543 [H]