| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311576
Identifier: 18311576
GI number: 18311576
Start: 2972325
End: 2973356
Strand: Reverse
Name: 18311576
Synonym: CPE2594
Alternate gene names: NA
Gene position: 2973356-2972325 (Counterclockwise)
Preceding gene: 18311577
Following gene: 18311575
Centisome position: 98.08
GC content: 30.04
Gene sequence:
>1032_bases ATGAGCAAATATGCGATACTTGCAAATCCAGGTCATAATCGTATTTATTTTGATACAGCGCTTAAGATTGCAGTTTCAGA ATTACAAGCAATTGCAGATGCTTATGATATGGAGATAAAGGAGATTGGAGAAGGGAATTTAGGTCTTCCAGCATCAATAT GCTTTAGTACTAATAGAGAGCTTAAGGAAGAAGACTTTAAAGCATTAAGTTTTTCATCAATTTATTATGCCTTATTTGAA ATAGTAGAGGGAAATCTTTTAAGACCTATTAGTGTCCCAGATTTTCATACATTCCCTGAAAGTATGGTTCAAATATTAAA ATATAATGGAAAGACAAATGAGCAATTTACTAGACTTATGGTAAATTTAGCTTTAAGTGCTTGTAAAACAGGAAGTAAAA AGATAACTTTATTAGATCCTATGTGTGGTAAAGGTACAACTTTATATGAAGGATTCATAAGAGGGTTTGATGTTAAAGGA ATAGAGATAAATGAGCAATGGACTCAAGAGATTCAAACTTATGTTGTTAGATTTTTAAAAGAAGGAAAGTTTAAGCATAA AGTTGAAAAATCTAAGGTGTCAGATTCTAAAAAGAAGAAAATAGCTAATGTGTTTAATTTAACTGCAGCAGCAGAAAAGA ATGCTTTTAATTCAGGAGAGGTTCAATCATTCCAGTTATTTAATTCAGATACTAGAAAAGCAGATCTTCTTATTAAGAAA AAATCTTGTGATATTATAATATCTGATTTACCTTATGGGGTTCAGCATGGAAGTAAGAATGATAGAAATTCTCTTATGGA AAGAAGTCCACTAGGGCTTTTAAAAGAAGCAATTCCAGCATGGCATAATGCATTAAAAACTAAAGGAAGTTTAGTACTTT CATACAATGAATTTACTATGAAATATGATGAGGTAGCTATTGTTTTAGAGGAAAATGGATTTAAAGTTCTTGATGAAACA CCTTATCATAATTATTTACATAGAGTAGATCAATCAATAAATAGAAATTTAATAGTAGCTGTAAAGGCTTAA
Upstream 100 bases:
>100_bases AAAAGTATCCTATTTTTTTATTAATATTTAAAGTGTGTGATGTTATAATATTATGGATAAAAAATAGAATTAAAAGATAA GAATAAGTGAGGATTTTTTT
Downstream 100 bases:
>100_bases AAATAGAGGATTACTAATTAAGTAATCCTTTATTTTTTACAAATTTAACTTAATTTTTTTATAGTTTTTTTATATTGCTA ATAGTATAATTTAAGGTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSKYAILANPGHNRIYFDTALKIAVSELQAIADAYDMEIKEIGEGNLGLPASICFSTNRELKEEDFKALSFSSIYYALFE IVEGNLLRPISVPDFHTFPESMVQILKYNGKTNEQFTRLMVNLALSACKTGSKKITLLDPMCGKGTTLYEGFIRGFDVKG IEINEQWTQEIQTYVVRFLKEGKFKHKVEKSKVSDSKKKKIANVFNLTAAAEKNAFNSGEVQSFQLFNSDTRKADLLIKK KSCDIIISDLPYGVQHGSKNDRNSLMERSPLGLLKEAIPAWHNALKTKGSLVLSYNEFTMKYDEVAIVLEENGFKVLDET PYHNYLHRVDQSINRNLIVAVKA
Sequences:
>Translated_343_residues MSKYAILANPGHNRIYFDTALKIAVSELQAIADAYDMEIKEIGEGNLGLPASICFSTNRELKEEDFKALSFSSIYYALFE IVEGNLLRPISVPDFHTFPESMVQILKYNGKTNEQFTRLMVNLALSACKTGSKKITLLDPMCGKGTTLYEGFIRGFDVKG IEINEQWTQEIQTYVVRFLKEGKFKHKVEKSKVSDSKKKKIANVFNLTAAAEKNAFNSGEVQSFQLFNSDTRKADLLIKK KSCDIIISDLPYGVQHGSKNDRNSLMERSPLGLLKEAIPAWHNALKTKGSLVLSYNEFTMKYDEVAIVLEENGFKVLDET PYHNYLHRVDQSINRNLIVAVKA >Mature_342_residues SKYAILANPGHNRIYFDTALKIAVSELQAIADAYDMEIKEIGEGNLGLPASICFSTNRELKEEDFKALSFSSIYYALFEI VEGNLLRPISVPDFHTFPESMVQILKYNGKTNEQFTRLMVNLALSACKTGSKKITLLDPMCGKGTTLYEGFIRGFDVKGI EINEQWTQEIQTYVVRFLKEGKFKHKVEKSKVSDSKKKKIANVFNLTAAAEKNAFNSGEVQSFQLFNSDTRKADLLIKKK SCDIIISDLPYGVQHGSKNDRNSLMERSPLGLLKEAIPAWHNALKTKGSLVLSYNEFTMKYDEVAIVLEENGFKVLDETP YHNYLHRVDQSINRNLIVAVKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38733; Mature: 38602
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYAILANPGHNRIYFDTALKIAVSELQAIADAYDMEIKEIGEGNLGLPASICFSTNRE CCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHEEECCCCH LKEEDFKALSFSSIYYALFEIVEGNLLRPISVPDFHTFPESMVQILKYNGKTNEQFTRLM HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH VNLALSACKTGSKKITLLDPMCGKGTTLYEGFIRGFDVKGIEINEQWTQEIQTYVVRFLK HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHH EGKFKHKVEKSKVSDSKKKKIANVFNLTAAAEKNAFNSGEVQSFQLFNSDTRKADLLIKK CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEE KSCDIIISDLPYGVQHGSKNDRNSLMERSPLGLLKEAIPAWHNALKTKGSLVLSYNEFTM CCCCEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECHHEE KYDEVAIVLEENGFKVLDETPYHNYLHRVDQSINRNLIVAVKA EECEEEEEEECCCCEEECCCCHHHHHHHHHHHCCCCEEEEEEC >Mature Secondary Structure SKYAILANPGHNRIYFDTALKIAVSELQAIADAYDMEIKEIGEGNLGLPASICFSTNRE CCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHEEECCCCH LKEEDFKALSFSSIYYALFEIVEGNLLRPISVPDFHTFPESMVQILKYNGKTNEQFTRLM HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH VNLALSACKTGSKKITLLDPMCGKGTTLYEGFIRGFDVKGIEINEQWTQEIQTYVVRFLK HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHH EGKFKHKVEKSKVSDSKKKKIANVFNLTAAAEKNAFNSGEVQSFQLFNSDTRKADLLIKK CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEE KSCDIIISDLPYGVQHGSKNDRNSLMERSPLGLLKEAIPAWHNALKTKGSLVLSYNEFTM CCCCEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECHHEE KYDEVAIVLEENGFKVLDETPYHNYLHRVDQSINRNLIVAVKA EECEEEEEEECCCCEEECCCCHHHHHHHHHHHCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA