| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311571
Identifier: 18311571
GI number: 18311571
Start: 2964520
End: 2966004
Strand: Reverse
Name: 18311571
Synonym: CPE2589
Alternate gene names: NA
Gene position: 2966004-2964520 (Counterclockwise)
Preceding gene: 18311572
Following gene: 18311568
Centisome position: 97.84
GC content: 28.42
Gene sequence:
>1485_bases ATGGGAAGAAAAGAGAAAAACTTATATAAAGCAGTTGATATAAAGCATAAGGAAATTATTGATGTTAGAGAGATAGGGTA TTATGCTACACCTCCATTTGTTGCAAGATATATAGGAAAAAGAATTATAGATATAAATGGTAAAGGGGAAACTTTATTTG ATCCATGTTGTGGAAAAGAGGAACTAACAGATTATTTTAGTGATTTAGGAATTAAAACCATAGGTATGGATTTAATAAAA TATAAAAACAATTATATATGTGAGTTTAAGAAAGGCAATTTTATAAATTATTATTGTTCTCAAAAAAATACAAAAACATG GGGCTATGATTATTACATTGCTAATCCACCATATAATTGTCATGAGGTTAATTTTATAAAGGAGAATAAGGAGAGGCTTA AGAATTATTTCAATGAGGTTGGGTTGCATAATATGTACAGCATGTTCATGTCTGCCATAATAGATAAGGCAAAGAATGGG GCTGTTATTGGATTAATTACTAATGATTCATTTTTTACAGCGAAAAATCATAAGAGGCTTAGGAATAAAATTCTTAGGGA ATGTTCTATACATGAAATAACCATGTGTCCTAGAGGACTTTTTCATAATCAAGGAGCAGATGTTAGGACAAGCATACTTA TTTTAAGAAAGGGAAAGGAGTATCAAGAAAAGATAGTTGTAAATAACAGGCCTAAATCCATAGAAGAATTTAAAGAGTTA TTAAATGGGGTAAAAGATGATAGTAATGAAAGGCTTTATAGCTTACAAGAGATTGTATTGCAAAATAAAAAGGATAATTT AGAGTTTTTAATAGAATGTCCTGAAGATATACGGAGTTTATTTAATAATATTAGATTGGGAGAAAAGTTTAAATGCGTAA CAGGGATCTCAACAGGTAATGATAAAGAGTTTTTATCTAAGGAAAAAAGCAATGAATTTACTATTCCTTTTTACAAAAAT CCAGGAAAAGATAAGTTTTATACAGATAGAGTAATTTATCTACATAAAGATTTTTTAGAAATAGAAAAGATTAATAGAAA TTTTAATGTTAGAAATAAAGAGGTTCTTTATAAAAGTGGTATAACCTGTTCATCTATGGGTGTTTCCTTTAATGCATGTA TATTACCTAAAAACTCTACCTTTGGAGTCAATCCTAATATAATATGTGAATCAGAAGAGGTTTGGTGGTTACTAGCTTAT TTAAATTCATCCCTAGTAACTTATCTTGTTAGGGGAGCGTTAATAAGAAGCAACATGATAACTTCAGGCTATGTATCTAG AATACCACTTTTAAGCTTTACTAAAGAGGAAAAAACTAAGCTTTCTCATTTAGCTAAAAGGGCTTATAAGTTAAGGAAAC AAAATTCTAGTATAGAAACTGAGTTATGTCATATAGACAATATTGTTAATCATGTTGCTAAAATTTCAAATGAGTCTAAA GATTTAATTTCTAATTTCAAAAAGTACTTAGTTGAAGTTACTTAG
Upstream 100 bases:
>100_bases TTACTCTTTTTGTTTTATAAGAGATTCTTAAAATTATAATTAATAGAAATATGTGGTAAAATATAATGGGAAAATATTTC TTTGTGATGTGAGGGGTTTT
Downstream 100 bases:
>100_bases TTTAATCTAACTTTATGTGACAGTACCCATTAGGATTCTTTTTAAGATATTTTTGATGATATTCTTCAGCTTTATAATAG TTTTCTAAGGGCTTAACCTC
Product: site specific DNA-methyltransferase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MGRKEKNLYKAVDIKHKEIIDVREIGYYATPPFVARYIGKRIIDINGKGETLFDPCCGKEELTDYFSDLGIKTIGMDLIK YKNNYICEFKKGNFINYYCSQKNTKTWGYDYYIANPPYNCHEVNFIKENKERLKNYFNEVGLHNMYSMFMSAIIDKAKNG AVIGLITNDSFFTAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILILRKGKEYQEKIVVNNRPKSIEEFKEL LNGVKDDSNERLYSLQEIVLQNKKDNLEFLIECPEDIRSLFNNIRLGEKFKCVTGISTGNDKEFLSKEKSNEFTIPFYKN PGKDKFYTDRVIYLHKDFLEIEKINRNFNVRNKEVLYKSGITCSSMGVSFNACILPKNSTFGVNPNIICESEEVWWLLAY LNSSLVTYLVRGALIRSNMITSGYVSRIPLLSFTKEEKTKLSHLAKRAYKLRKQNSSIETELCHIDNIVNHVAKISNESK DLISNFKKYLVEVT
Sequences:
>Translated_494_residues MGRKEKNLYKAVDIKHKEIIDVREIGYYATPPFVARYIGKRIIDINGKGETLFDPCCGKEELTDYFSDLGIKTIGMDLIK YKNNYICEFKKGNFINYYCSQKNTKTWGYDYYIANPPYNCHEVNFIKENKERLKNYFNEVGLHNMYSMFMSAIIDKAKNG AVIGLITNDSFFTAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILILRKGKEYQEKIVVNNRPKSIEEFKEL LNGVKDDSNERLYSLQEIVLQNKKDNLEFLIECPEDIRSLFNNIRLGEKFKCVTGISTGNDKEFLSKEKSNEFTIPFYKN PGKDKFYTDRVIYLHKDFLEIEKINRNFNVRNKEVLYKSGITCSSMGVSFNACILPKNSTFGVNPNIICESEEVWWLLAY LNSSLVTYLVRGALIRSNMITSGYVSRIPLLSFTKEEKTKLSHLAKRAYKLRKQNSSIETELCHIDNIVNHVAKISNESK DLISNFKKYLVEVT >Mature_493_residues GRKEKNLYKAVDIKHKEIIDVREIGYYATPPFVARYIGKRIIDINGKGETLFDPCCGKEELTDYFSDLGIKTIGMDLIKY KNNYICEFKKGNFINYYCSQKNTKTWGYDYYIANPPYNCHEVNFIKENKERLKNYFNEVGLHNMYSMFMSAIIDKAKNGA VIGLITNDSFFTAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILILRKGKEYQEKIVVNNRPKSIEEFKELL NGVKDDSNERLYSLQEIVLQNKKDNLEFLIECPEDIRSLFNNIRLGEKFKCVTGISTGNDKEFLSKEKSNEFTIPFYKNP GKDKFYTDRVIYLHKDFLEIEKINRNFNVRNKEVLYKSGITCSSMGVSFNACILPKNSTFGVNPNIICESEEVWWLLAYL NSSLVTYLVRGALIRSNMITSGYVSRIPLLSFTKEEKTKLSHLAKRAYKLRKQNSSIETELCHIDNIVNHVAKISNESKD LISNFKKYLVEVT
Specific function: Unknown
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57390; Mature: 57259
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRKEKNLYKAVDIKHKEIIDVREIGYYATPPFVARYIGKRIIDINGKGETLFDPCCGKE CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCCCCEEECCCCCHH ELTDYFSDLGIKTIGMDLIKYKNNYICEFKKGNFINYYCSQKNTKTWGYDYYIANPPYNC HHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCC HEVNFIKENKERLKNYFNEVGLHNMYSMFMSAIIDKAKNGAVIGLITNDSFFTAKNHKRL CEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECHHHHHH RNKILRECSIHEITMCPRGLFHNQGADVRTSILILRKGKEYQEKIVVNNRPKSIEEFKEL HHHHHHHCCCCEEECCCCCHHCCCCCCCEEEEEEEECCCCHHHHEEECCCCCHHHHHHHH LNGVKDDSNERLYSLQEIVLQNKKDNLEFLIECPEDIRSLFNNIRLGEKFKCVTGISTGN HHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCC DKEFLSKEKSNEFTIPFYKNPGKDKFYTDRVIYLHKDFLEIEKINRNFNVRNKEVLYKSG CHHHHHHCCCCCEEEEEECCCCCCCCEECEEEEEEHHHHHHHHHCCCCCCCCCEEHEECC ITCSSMGVSFNACILPKNSTFGVNPNIICESEEVWWLLAYLNSSLVTYLVRGALIRSNMI CEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCC TSGYVSRIPLLSFTKEEKTKLSHLAKRAYKLRKQNSSIETELCHIDNIVNHVAKISNESK CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHH DLISNFKKYLVEVT HHHHHHHHHHEECC >Mature Secondary Structure GRKEKNLYKAVDIKHKEIIDVREIGYYATPPFVARYIGKRIIDINGKGETLFDPCCGKE CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCCCCEEECCCCCHH ELTDYFSDLGIKTIGMDLIKYKNNYICEFKKGNFINYYCSQKNTKTWGYDYYIANPPYNC HHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCC HEVNFIKENKERLKNYFNEVGLHNMYSMFMSAIIDKAKNGAVIGLITNDSFFTAKNHKRL CEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECHHHHHH RNKILRECSIHEITMCPRGLFHNQGADVRTSILILRKGKEYQEKIVVNNRPKSIEEFKEL HHHHHHHCCCCEEECCCCCHHCCCCCCCEEEEEEEECCCCHHHHEEECCCCCHHHHHHHH LNGVKDDSNERLYSLQEIVLQNKKDNLEFLIECPEDIRSLFNNIRLGEKFKCVTGISTGN HHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCC DKEFLSKEKSNEFTIPFYKNPGKDKFYTDRVIYLHKDFLEIEKINRNFNVRNKEVLYKSG CHHHHHHCCCCCEEEEEECCCCCCCCEECEEEEEEHHHHHHHHHCCCCCCCCCEEHEECC ITCSSMGVSFNACILPKNSTFGVNPNIICESEEVWWLLAYLNSSLVTYLVRGALIRSNMI CEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCC TSGYVSRIPLLSFTKEEKTKLSHLAKRAYKLRKQNSSIETELCHIDNIVNHVAKISNESK CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHH DLISNFKKYLVEVT HHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA