Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18311567

Identifier: 18311567

GI number: 18311567

Start: 2961168

End: 2962445

Strand: Direct

Name: 18311567

Synonym: CPE2585

Alternate gene names: NA

Gene position: 2961168-2962445 (Clockwise)

Preceding gene: 18311565

Following gene: 18311569

Centisome position: 97.68

GC content: 30.91

Gene sequence:

>1278_bases
ATGGTTCCTATAAATGATGGTGGAAATATAACAATACCAGTAGCCTTTTTCACAACTAGACTTAAAGATTTAATAGGTGA
TTATTTACCTACTTTATCAATGATAGTTGTTGTAATAGCTGCTTCATTAACAATAATAACTAAAGCATTTAAGCCAAAAT
TTATAATAGAAAATAACTTTTTAAATTCATTATTAAATGTTAATTGGATTTGGACAATTGGAAGAATCTTAGGTGGATTA
TTCATACTATCAGCATTTACTGGATTTGGACCTGAAATAATAAAATCTGATTTAACTGGGGCATTCATATTAAATGATTT
ACTACCAACACTTATAGTAGTATTCTTCTTTGCAGGATTATTCCTGCCGCTTCTTTTAAACTTTGGTTTATTAGAATTCT
GTGGTGCCTTACTAACTAAAATAATGAGACCATTATTTAAACTACCTGGACGTTCATCAATAGACTGTATGACTTCTTGG
TTAGGTGATGGAACTATTGGGGTATTACTTACTTCAAAACAATATGAAGAAGGATTTTATACTGAGAGAGAAGCTTGTAT
AGTTAGTACAATGTTCTCAGTTGTTTCAATAACTTTTAGCTTTGTTGTTTTATCACAGGTTGGATTAGAGAATATGTTTA
TCCCATTCTATTTAACTGTTACTTTTGCTGGAATAGTTGCCGCTATAATTCTTCCAAGAGTTTGGCCTCTTAGCAAAAAA
CCTGATGCTTATTTTAACAATGCAGAACCTAAAAATGTAGAAGATGTTCCTGAAGGATTTACTCCTTTCACTTTTGGAGT
TTTTAAAGCAGTTGAAAAAGCCCAAAATGAAAGTAGCTTAAAAAAATTCTTTGCTGATGGAATTAAAAACGTACTTGAAA
TGTGGATAGGAGTTTTACCTGTAGTTATGGCAATGGGTACATTAGCTCTTATGATAGCTGAATATACTCCTGTATTCCAA
TGGCTTGGTGTTCCTTTCATTCCTTTATTTAAGATTTTAGGAATTCCTGAAGCTTCCGCTGCTTCTCAAACTGTTATAGT
TGGATTTGCAGATATGTTCCTTCCATCAGTTATAGCATCAAAAACTATTTTAAGTGATATGACTAAATTTGTAGTTGCTT
GTGTATCAGTAACTCAACTTATATACTTATCAGAAGTTGGAAGTGTTATTTTAGGATCAAAAATACCACTAAACTTAAAA
GAATTATTTATGATATTCTTAATGAGAACATTAGTTACTCTACCAGTTATAGCACTTATAGCACACTTATTGTTCTAA

Upstream 100 bases:

>100_bases
ATTTGTTTATTAAAAAGGGGGACTAAAATTGAAAACTAAATATAAATCGTCTGATTTATTAAAGTTTATAATTCCATCTT
TATTAGGAGTAATTTTATTT

Downstream 100 bases:

>100_bases
AAAGTAAAAGAGATTGTTTAAAACAATCTCTTTTTTATTTATCTTGGATTTTTTACACTTAAAGTGCTTACTGCATTTGG
AGTTACTAAAAACTCAATTA

Product: nucleoside recognition domain protein

Products: NA

Alternate protein names: ORF A [H]

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MVPINDGGNITIPVAFFTTRLKDLIGDYLPTLSMIVVVIAASLTIITKAFKPKFIIENNFLNSLLNVNWIWTIGRILGGL
FILSAFTGFGPEIIKSDLTGAFILNDLLPTLIVVFFFAGLFLPLLLNFGLLEFCGALLTKIMRPLFKLPGRSSIDCMTSW
LGDGTIGVLLTSKQYEEGFYTEREACIVSTMFSVVSITFSFVVLSQVGLENMFIPFYLTVTFAGIVAAIILPRVWPLSKK
PDAYFNNAEPKNVEDVPEGFTPFTFGVFKAVEKAQNESSLKKFFADGIKNVLEMWIGVLPVVMAMGTLALMIAEYTPVFQ
WLGVPFIPLFKILGIPEASAASQTVIVGFADMFLPSVIASKTILSDMTKFVVACVSVTQLIYLSEVGSVILGSKIPLNLK
ELFMIFLMRTLVTLPVIALIAHLLF

Sequences:

>Translated_425_residues
MVPINDGGNITIPVAFFTTRLKDLIGDYLPTLSMIVVVIAASLTIITKAFKPKFIIENNFLNSLLNVNWIWTIGRILGGL
FILSAFTGFGPEIIKSDLTGAFILNDLLPTLIVVFFFAGLFLPLLLNFGLLEFCGALLTKIMRPLFKLPGRSSIDCMTSW
LGDGTIGVLLTSKQYEEGFYTEREACIVSTMFSVVSITFSFVVLSQVGLENMFIPFYLTVTFAGIVAAIILPRVWPLSKK
PDAYFNNAEPKNVEDVPEGFTPFTFGVFKAVEKAQNESSLKKFFADGIKNVLEMWIGVLPVVMAMGTLALMIAEYTPVFQ
WLGVPFIPLFKILGIPEASAASQTVIVGFADMFLPSVIASKTILSDMTKFVVACVSVTQLIYLSEVGSVILGSKIPLNLK
ELFMIFLMRTLVTLPVIALIAHLLF
>Mature_425_residues
MVPINDGGNITIPVAFFTTRLKDLIGDYLPTLSMIVVVIAASLTIITKAFKPKFIIENNFLNSLLNVNWIWTIGRILGGL
FILSAFTGFGPEIIKSDLTGAFILNDLLPTLIVVFFFAGLFLPLLLNFGLLEFCGALLTKIMRPLFKLPGRSSIDCMTSW
LGDGTIGVLLTSKQYEEGFYTEREACIVSTMFSVVSITFSFVVLSQVGLENMFIPFYLTVTFAGIVAAIILPRVWPLSKK
PDAYFNNAEPKNVEDVPEGFTPFTFGVFKAVEKAQNESSLKKFFADGIKNVLEMWIGVLPVVMAMGTLALMIAEYTPVFQ
WLGVPFIPLFKILGIPEASAASQTVIVGFADMFLPSVIASKTILSDMTKFVVACVSVTQLIYLSEVGSVILGSKIPLNLK
ELFMIFLMRTLVTLPVIALIAHLLF

Specific function: Unknown

COG id: COG3314

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011642 [H]

Pfam domain/function: PF07670 Gate [H]

EC number: NA

Molecular weight: Translated: 46730; Mature: 46730

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPINDGGNITIPVAFFTTRLKDLIGDYLPTLSMIVVVIAASLTIITKAFKPKFIIENNF
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
LNSLLNVNWIWTIGRILGGLFILSAFTGFGPEIIKSDLTGAFILNDLLPTLIVVFFFAGL
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
FLPLLLNFGLLEFCGALLTKIMRPLFKLPGRSSIDCMTSWLGDGTIGVLLTSKQYEEGFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCHHHCCCC
TEREACIVSTMFSVVSITFSFVVLSQVGLENMFIPFYLTVTFAGIVAAIILPRVWPLSKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDAYFNNAEPKNVEDVPEGFTPFTFGVFKAVEKAQNESSLKKFFADGIKNVLEMWIGVLP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VVMAMGTLALMIAEYTPVFQWLGVPFIPLFKILGIPEASAASQTVIVGFADMFLPSVIAS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHH
KTILSDMTKFVVACVSVTQLIYLSEVGSVILGSKIPLNLKELFMIFLMRTLVTLPVIALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AHLLF
HHHHC
>Mature Secondary Structure
MVPINDGGNITIPVAFFTTRLKDLIGDYLPTLSMIVVVIAASLTIITKAFKPKFIIENNF
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
LNSLLNVNWIWTIGRILGGLFILSAFTGFGPEIIKSDLTGAFILNDLLPTLIVVFFFAGL
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
FLPLLLNFGLLEFCGALLTKIMRPLFKLPGRSSIDCMTSWLGDGTIGVLLTSKQYEEGFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCHHHCCCC
TEREACIVSTMFSVVSITFSFVVLSQVGLENMFIPFYLTVTFAGIVAAIILPRVWPLSKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDAYFNNAEPKNVEDVPEGFTPFTFGVFKAVEKAQNESSLKKFFADGIKNVLEMWIGVLP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VVMAMGTLALMIAEYTPVFQWLGVPFIPLFKILGIPEASAASQTVIVGFADMFLPSVIAS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHH
KTILSDMTKFVVACVSVTQLIYLSEVGSVILGSKIPLNLKELFMIFLMRTLVTLPVIALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AHLLF
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA