| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yabN [H]
Identifier: 18311462
GI number: 18311462
Start: 2837305
End: 2838756
Strand: Reverse
Name: yabN [H]
Synonym: CPE2480
Alternate gene names: 18311462
Gene position: 2838756-2837305 (Counterclockwise)
Preceding gene: 18311463
Following gene: 18311461
Centisome position: 93.64
GC content: 29.2
Gene sequence:
>1452_bases ATGCTTAAGATAATGGGTCTAGGGCCAGGTGCCTATGAAGCATTAACAATAGGTGCTTTAAAAGAATTAAAAAACAATAA AAATATATATTTTAGAACAGAAAAACATCCTACAGTGGATTTCTTAAAAGATGAAGGAATTAAGTTTGAATCATATGATC ATGCATATGAAAAATATGATAGCTTTGATGATGTATATAAATATATTGCAGAGGATTTAATAACTAAAATTAAGGATGAT GAGGATTTAATATATGCAGTACCAGGTCATCCTTTAGTGGCAGAAAAATCAGTAATTAATTTAATTGAATTATGTAAGGA AAATAATATTCAGTATGAAGTTTTGCCAGCAGTTAGCTTTGTAGATGCTATGATGGAAGCTTTGCAAGTAGATCCAATAG AGGGTGTAAAAATAATTGATGCCTTTGACATGAAAAATCAAATATTAGATAAGCGTGTTGGAACTATAATAACTCAAGTT TATAATAATTTCATAGCTTCAGAGGTTAAGTTAAGACTTCTAGAAGGATATGAAGATGATACTGAAATAATATTTGTAAG AGCGGCTGGAGTTGAAGGTTTAGAGAGTATAAGAAAAATACCTTTATATGAATTAGATTGGCAAGAAGATATAGATTATT TAACTTCAATATATATACCTAAGGATTTAGGAAATAAAAAAGATTTTCAAGATTTATTAGATATTATAGAAACTTTAAGA AACCCAGGTGGATGTCCTTGGGATAGAGAGCAAACTCATGAGAGTTTAAAGAGTGCTCTTTTAGAAGAATGCTATGAAGT AATTGATGCTATTGAAAATGAGGATGAGGATGCTTTAATAGAAGAGCTTGGTGATGTTTTACTTCAAGTTGTATTCCACG CTTCTATAGGTAAGGAAGATGGATATTTTGATATTATGGATGTAATAGGTGGAATATCAAATAAAATGATAAATAGACAT CCTCATGTCTTTGGAAATGAAGAAGCAAATACTTCAGAGCAAGTTTTAGTAAATTGGGATGAAATTAAGAAAGAAGAAAA AGGTATTAAAACTTTAACAGAAGAAATGCAAAACATAGCTAAATCTCTTCCAGCTACAACAAGAGCTTATAAGGTTCAAA AGAAAGCAAAAAAAGTAGGCTTTGACTGGGATGATGTAAATTGTGCTATGGATAAAGTAAAAGAAGAATTAAATGAAATA AAAGAGGTTTATAATTGTGAAGATAAGTCAATAATAGAAGGTGAAGTAGGTGACTTACTTTTTGCTTGTATAAATGTAGC AAGATTCCTAGAAGTTGATGGAGAATTAGCTTTAGATAAAACAATTAAAAAGTTTATAAAGAGATTCTCTTATATTGAAA ATGAAGCAATAAAAAACAATAAGAATTTAAAAGATATGACCTTAGAAGAGATGGATAAACTATGGGAAGAGGCTAAAACA AGTGAAAAATAA
Upstream 100 bases:
>100_bases TATATATGATATCATTGTTTGTACTTAAAATTTTTAGCGTAGAAGAAATAAAGGGACGGCTAAGAAATTAATTTTTATAA GTTGCGAAGGAGAATATGGA
Downstream 100 bases:
>100_bases GTGTTTTTACTAATTTATGGCTTGTTAAAATGAAAAAAAGCATAAATTTTAAAAAAAATGCAAAAATATCAGTATTTTTA GGGCAAAAATTGAAAGTATT
Product: MazG family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MLKIMGLGPGAYEALTIGALKELKNNKNIYFRTEKHPTVDFLKDEGIKFESYDHAYEKYDSFDDVYKYIAEDLITKIKDD EDLIYAVPGHPLVAEKSVINLIELCKENNIQYEVLPAVSFVDAMMEALQVDPIEGVKIIDAFDMKNQILDKRVGTIITQV YNNFIASEVKLRLLEGYEDDTEIIFVRAAGVEGLESIRKIPLYELDWQEDIDYLTSIYIPKDLGNKKDFQDLLDIIETLR NPGGCPWDREQTHESLKSALLEECYEVIDAIENEDEDALIEELGDVLLQVVFHASIGKEDGYFDIMDVIGGISNKMINRH PHVFGNEEANTSEQVLVNWDEIKKEEKGIKTLTEEMQNIAKSLPATTRAYKVQKKAKKVGFDWDDVNCAMDKVKEELNEI KEVYNCEDKSIIEGEVGDLLFACINVARFLEVDGELALDKTIKKFIKRFSYIENEAIKNNKNLKDMTLEEMDKLWEEAKT SEK
Sequences:
>Translated_483_residues MLKIMGLGPGAYEALTIGALKELKNNKNIYFRTEKHPTVDFLKDEGIKFESYDHAYEKYDSFDDVYKYIAEDLITKIKDD EDLIYAVPGHPLVAEKSVINLIELCKENNIQYEVLPAVSFVDAMMEALQVDPIEGVKIIDAFDMKNQILDKRVGTIITQV YNNFIASEVKLRLLEGYEDDTEIIFVRAAGVEGLESIRKIPLYELDWQEDIDYLTSIYIPKDLGNKKDFQDLLDIIETLR NPGGCPWDREQTHESLKSALLEECYEVIDAIENEDEDALIEELGDVLLQVVFHASIGKEDGYFDIMDVIGGISNKMINRH PHVFGNEEANTSEQVLVNWDEIKKEEKGIKTLTEEMQNIAKSLPATTRAYKVQKKAKKVGFDWDDVNCAMDKVKEELNEI KEVYNCEDKSIIEGEVGDLLFACINVARFLEVDGELALDKTIKKFIKRFSYIENEAIKNNKNLKDMTLEEMDKLWEEAKT SEK >Mature_483_residues MLKIMGLGPGAYEALTIGALKELKNNKNIYFRTEKHPTVDFLKDEGIKFESYDHAYEKYDSFDDVYKYIAEDLITKIKDD EDLIYAVPGHPLVAEKSVINLIELCKENNIQYEVLPAVSFVDAMMEALQVDPIEGVKIIDAFDMKNQILDKRVGTIITQV YNNFIASEVKLRLLEGYEDDTEIIFVRAAGVEGLESIRKIPLYELDWQEDIDYLTSIYIPKDLGNKKDFQDLLDIIETLR NPGGCPWDREQTHESLKSALLEECYEVIDAIENEDEDALIEELGDVLLQVVFHASIGKEDGYFDIMDVIGGISNKMINRH PHVFGNEEANTSEQVLVNWDEIKKEEKGIKTLTEEMQNIAKSLPATTRAYKVQKKAKKVGFDWDDVNCAMDKVKEELNEI KEVYNCEDKSIIEGEVGDLLFACINVARFLEVDGELALDKTIKKFIKRFSYIENEAIKNNKNLKDMTLEEMDKLWEEAKT SEK
Specific function: Unknown
COG id: COG3956
COG function: function code R; Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789144, Length=256, Percent_Identity=43.359375, Blast_Score=218, Evalue=7e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000878 - InterPro: IPR014777 - InterPro: IPR004518 - InterPro: IPR011551 [H]
Pfam domain/function: PF03819 MazG; PF00590 TP_methylase [H]
EC number: NA
Molecular weight: Translated: 55382; Mature: 55382
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKIMGLGPGAYEALTIGALKELKNNKNIYFRTEKHPTVDFLKDEGIKFESYDHAYEKYD CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHC SFDDVYKYIAEDLITKIKDDEDLIYAVPGHPLVAEKSVINLIELCKENNIQYEVLPAVSF CHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHH VDAMMEALQVDPIEGVKIIDAFDMKNQILDKRVGTIITQVYNNFIASEVKLRLLEGYEDD HHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TEIIFVRAAGVEGLESIRKIPLYELDWQEDIDYLTSIYIPKDLGNKKDFQDLLDIIETLR CEEEEEEECCHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC NPGGCPWDREQTHESLKSALLEECYEVIDAIENEDEDALIEELGDVLLQVVFHASIGKED CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC GYFDIMDVIGGISNKMINRHPHVFGNEEANTSEQVLVNWDEIKKEEKGIKTLTEEMQNIA CCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHH KSLPATTRAYKVQKKAKKVGFDWDDVNCAMDKVKEELNEIKEVYNCEDKSIIEGEVGDLL HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH FACINVARFLEVDGELALDKTIKKFIKRFSYIENEAIKNNKNLKDMTLEEMDKLWEEAKT HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHC SEK CCC >Mature Secondary Structure MLKIMGLGPGAYEALTIGALKELKNNKNIYFRTEKHPTVDFLKDEGIKFESYDHAYEKYD CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHC SFDDVYKYIAEDLITKIKDDEDLIYAVPGHPLVAEKSVINLIELCKENNIQYEVLPAVSF CHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHH VDAMMEALQVDPIEGVKIIDAFDMKNQILDKRVGTIITQVYNNFIASEVKLRLLEGYEDD HHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TEIIFVRAAGVEGLESIRKIPLYELDWQEDIDYLTSIYIPKDLGNKKDFQDLLDIIETLR CEEEEEEECCHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC NPGGCPWDREQTHESLKSALLEECYEVIDAIENEDEDALIEELGDVLLQVVFHASIGKED CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC GYFDIMDVIGGISNKMINRHPHVFGNEEANTSEQVLVNWDEIKKEEKGIKTLTEEMQNIA CCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHH KSLPATTRAYKVQKKAKKVGFDWDDVNCAMDKVKEELNEIKEVYNCEDKSIIEGEVGDLL HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH FACINVARFLEVDGELALDKTIKKFIKRFSYIENEAIKNNKNLKDMTLEEMDKLWEEAKT HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHC SEK CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]