| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is cphA [H]
Identifier: 18311428
GI number: 18311428
Start: 2793657
End: 2795318
Strand: Reverse
Name: cphA [H]
Synonym: CPE2446
Alternate gene names: 18311428
Gene position: 2795318-2793657 (Counterclockwise)
Preceding gene: 18311429
Following gene: 18311426
Centisome position: 92.21
GC content: 27.62
Gene sequence:
>1662_bases TTGAAACTAAAGGATTTAAGAGTTCTAGAGGGGAGAAATATAAAGGGAGAAGAAAATCTTATATTTATAGACATAGAGGA ATCTGAAAGAAAAAGATTATATTGGTTAATAAGCGATTATGAGTTCATATGCAGAAAGATGAATATGGAAGGTACTCTAA AAGAGGCTATATATAATGAGTTTGGAGGATGTGCGTGGTTAACTTACTCTAATAAGGAATTAGCTTTATTTATAATTGAA AGCTTAATAGAGGGAGTAAGTGCAGATAAATTATTAAATGAAGCTGTAGCTAAAAAGCAACGTATTTGGGAGTATAACTT ATTAGAAGAGTGTTCTAAGAAAAAAATAGACTTCTTTAAAGAGGATGATGAGATAATAGTAGGGTATGGAGTAAATTCTA AGAGAATAAGTAAAGAGGATTATGAAAATAAAAATTATAATCTGGATTTAATAAATAATGGAGTTATTCCTATAGTATCT ATAACAGGAACTAATGGTAAAACATCTACTTCAAGATTAATATATAAAGGTTTTGAGAATTTAGGGTATTTCTCTGGATT GGCTATGACTGGTGGAATAATTATAAATAATGAGTTTGTAAAGAAGGGAGATACTACAGGATTTTATAGTGCTAAAAAGG TTCTTACAAATCCACAGGTTGAAGTTGAGGTTTTAGAGACTGCTAGAGGTGGTATTTTAAGAAAGGGATTAGGATTTAAA AATTCTAAGGTTGCCATAATAACATCCTTAGCAGAGGACCACATAGGGGTAGATGGAATAAAAGATATTAATGATTTACT AGATATAAAACTAATTACAACTAGAGAGGTTTTACCGGAAGGAAAAGTAATAATAAAGGCAGAGCCAAAGCTATATGAAG TTTTACAGACAAAAGAGAACTTAGTTTTATTTAATTCTAAAAAGAATGAATATATTGAAAAACACATGAAAAATGGTAAG GAAGCTTGGTTCGTAGAGGATGAAAATGTAATATTTTTTGATGGTAAAGATAAAAATATAATCTCTAATATAAAAGATTT TAAGTTTACTCATAATGGTAATTCAAAAACTAATATAAATAATATTTTAGTATCTATAGCTGCTATATATGAAGTACATA AAAATTTAAAGGAAGTAGTGGATTCCTTAAAAAATATAGAGTGTGATGTCTATAACAATATTGGAAGACAAAACATAATT GAACTTGAAAATTTTAAGATTATATTGGACTATGGTCATAATCCAGAAGCCTTTGAGGAATTATTTTACTTAGCTAATAA TATCAAAAGAAATAAGATAATTTCTATAGTTTCATCACCAGGGGATAGACTTGATGAATACATAAAAGAATTAGGAAGAA TAGCAGGTAAAAATTCAGATACTATTATAATAAAAGAAACCTTTGATAGAAGGGGAAGAGAGGAATTAGAAATAACTAAT TTAATAAAAAGTGGGATAAATGAAATTAAAAATAAATCAGTAGAAGTATTATCAATAATAGATGAAGAAGAAGCTATCAA AAAGGCAATATCAATGGCCAAAGAAGGAGATATTATAGTAGATTTTACTCAACATTTAGATGTAGTAATACCTGTTATAA ATAAATACTTATCTCATCATGGAAAAGAAATTATAGAGGTTGATTTAGAAGATTTTCACTAA
Upstream 100 bases:
>100_bases CAGCTTTAAGCTGCTTTTTTTATTTTAAAGTAAATTTTGAATAAATGTAGGAGAGTGTTGGGAAAATATAATATAAAAAA TGGTAGGAAGGGTGAGTGAT
Downstream 100 bases:
>100_bases AGAAAAAGACTATATCAAATTCCTAAGTAATGGAGTTTGCATATAGTCTTTTATATCATATCTTCGGAAGTTAGTTCTAA TATTTTTATTGTAGTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Cyanophycin synthase [H]
Number of amino acids: Translated: 553; Mature: 553
Protein sequence:
>553_residues MKLKDLRVLEGRNIKGEENLIFIDIEESERKRLYWLISDYEFICRKMNMEGTLKEAIYNEFGGCAWLTYSNKELALFIIE SLIEGVSADKLLNEAVAKKQRIWEYNLLEECSKKKIDFFKEDDEIIVGYGVNSKRISKEDYENKNYNLDLINNGVIPIVS ITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVLTNPQVEVEVLETARGGILRKGLGFK NSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTREVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGK EAWFVEDENVIFFDGKDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIGRQNII ELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIAGKNSDTIIIKETFDRRGREELEITN LIKSGINEIKNKSVEVLSIIDEEEAIKKAISMAKEGDIIVDFTQHLDVVIPVINKYLSHHGKEIIEVDLEDFH
Sequences:
>Translated_553_residues MKLKDLRVLEGRNIKGEENLIFIDIEESERKRLYWLISDYEFICRKMNMEGTLKEAIYNEFGGCAWLTYSNKELALFIIE SLIEGVSADKLLNEAVAKKQRIWEYNLLEECSKKKIDFFKEDDEIIVGYGVNSKRISKEDYENKNYNLDLINNGVIPIVS ITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVLTNPQVEVEVLETARGGILRKGLGFK NSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTREVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGK EAWFVEDENVIFFDGKDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIGRQNII ELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIAGKNSDTIIIKETFDRRGREELEITN LIKSGINEIKNKSVEVLSIIDEEEAIKKAISMAKEGDIIVDFTQHLDVVIPVINKYLSHHGKEIIEVDLEDFH >Mature_553_residues MKLKDLRVLEGRNIKGEENLIFIDIEESERKRLYWLISDYEFICRKMNMEGTLKEAIYNEFGGCAWLTYSNKELALFIIE SLIEGVSADKLLNEAVAKKQRIWEYNLLEECSKKKIDFFKEDDEIIVGYGVNSKRISKEDYENKNYNLDLINNGVIPIVS ITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVLTNPQVEVEVLETARGGILRKGLGFK NSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTREVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGK EAWFVEDENVIFFDGKDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIGRQNII ELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIAGKNSDTIIIKETFDRRGREELEITN LIKSGINEIKNKSVEVLSIIDEEEAIKKAISMAKEGDIIVDFTQHLDVVIPVINKYLSHHGKEIIEVDLEDFH
Specific function: Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) [H]
COG id: COG0769
COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013651 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR011810 - InterPro: IPR004101 - InterPro: IPR013221 [H]
Pfam domain/function: PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; PF08443 RimK [H]
EC number: =6.3.2.29; =6.3.2.30 [H]
Molecular weight: Translated: 63159; Mature: 63159
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKDLRVLEGRNIKGEENLIFIDIEESERKRLYWLISDYEFICRKMNMEGTLKEAIYNE CCCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHH FGGCAWLTYSNKELALFIIESLIEGVSADKLLNEAVAKKQRIWEYNLLEECSKKKIDFFK CCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EDDEIIVGYGVNSKRISKEDYENKNYNLDLINNGVIPIVSITGTNGKTSTSRLIYKGFEN CCCCEEEEECCCCCCCCHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHH LGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVLTNPQVEVEVLETARGGILRKGLGFK CCHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHHHCCCCEEEEEEHHHCCCHHHCCCCCC NSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTREVLPEGKVIIKAEPKLYEVLQTKEN CCCEEEEEEEHHHCCCCCCHHHHHHHHEEEEEEEHHCCCCCCEEEEECCHHHHHHHCCCC LVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDGKDKNIISNIKDFKFTHNGNSKTNIN EEEEECCCHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHCHHHCEEEECCCCCCHHH NILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIGRQNIIELENFKIILDYGHNPEAFEE HHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCCCEEEEECEEEEEECCCCHHHHHH LFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIAGKNSDTIIIKETFDRRGREELEITN HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH LIKSGINEIKNKSVEVLSIIDEEEAIKKAISMAKEGDIIVDFTQHLDVVIPVINKYLSHH HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC GKEIIEVDLEDFH CCEEEEEECCCCC >Mature Secondary Structure MKLKDLRVLEGRNIKGEENLIFIDIEESERKRLYWLISDYEFICRKMNMEGTLKEAIYNE CCCCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHH FGGCAWLTYSNKELALFIIESLIEGVSADKLLNEAVAKKQRIWEYNLLEECSKKKIDFFK CCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EDDEIIVGYGVNSKRISKEDYENKNYNLDLINNGVIPIVSITGTNGKTSTSRLIYKGFEN CCCCEEEEECCCCCCCCHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHH LGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVLTNPQVEVEVLETARGGILRKGLGFK CCHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHHHCCCCEEEEEEHHHCCCHHHCCCCCC NSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTREVLPEGKVIIKAEPKLYEVLQTKEN CCCEEEEEEEHHHCCCCCCHHHHHHHHEEEEEEEHHCCCCCCEEEEECCHHHHHHHCCCC LVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDGKDKNIISNIKDFKFTHNGNSKTNIN EEEEECCCHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHCHHHCEEEECCCCCCHHH NILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIGRQNIIELENFKIILDYGHNPEAFEE HHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCCCEEEEECEEEEEECCCCHHHHHH LFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIAGKNSDTIIIKETFDRRGREELEITN HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH LIKSGINEIKNKSVEVLSIIDEEEAIKKAISMAKEGDIIVDFTQHLDVVIPVINKYLSHH HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC GKEIIEVDLEDFH CCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9652408 [H]