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The map label for this gene is yvoA [H]

Identifier: 18311417

GI number: 18311417

Start: 2783822

End: 2784544

Strand: Reverse

Name: yvoA [H]

Synonym: CPE2435

Alternate gene names: 18311417

Gene position: 2784544-2783822 (Counterclockwise)

Preceding gene: 18311420

Following gene: 18311416

Centisome position: 91.86

GC content: 30.84

Gene sequence:

>723_bases
ATGATAGATAAAAATAGTCCTATACCTGTGTATTACCAATTAAAAGAGATGATAAAAGAAAAGATAGCAGATGGCACTTG
GCAAGTAGGACAGTGTATAGCAAGCGAAAGAGAGTTAACAGAGGCTTATGGAGTAAGTCGAATGACTGTCAGACAGGCTT
TAGGAGAACTAGTACAAGAAGGTCTTCTTGTTAGAGAAAAAGGAAAAGGAACCTTCGTATGTGAACCTAAAGTAAAGCAA
GAAGATATGATGAGTTTCTCAGAAATTATAAAAAAAGCAGGAAGAAGTTTAATAACTAAAGTTATAGATTTTGAAGTTAT
TAATACCCCTGAAGAATTAGCAGATACTTTTGATGTAGAAAAAATATATAAAATAAATAGATTAAGATTAGTTGATGGTG
AAGCTGTTGCTAATGAGGTTGTTTATATTCCTTGTGAATATTGTGGCTTTGTAACTAGAGATGATTTAGAGGGGTCCTTA
TTTAAGTTATTAGAAGAAAAGGGACATATTATAGAAAGTACAGAATCATCTTTAGCAGCTGTAATAATGGATGATGAGCT
AAAAGCTTTATTTAATGTGAATAAACAAGTACCTCTTTTAAAAAGTCATAACACAGCTTTAAATTCAGAAGGCGAAATAA
TTTACGTTGAAGATGCAATTTATAGGTCAGACAAATATATATTAGAAATTAATATTTCTAAAAGAGAGGGGAAATTGAAA
TGA

Upstream 100 bases:

>100_bases
AATATAACATAGACTAAATATGAAATTATTACAAAAAGAATGTATAGTGGTCTAGACAAGTTAGAACCAGTTGAGTATAA
TTTAATTAGGAGGAGAAATC

Downstream 100 bases:

>100_bases
GATTAATCGTTACTAAGAATTATGAGGAAATGAGTAAAGTTGCAGCTAAAGAAATGGCTGAAGATATAAAAAGAAATCCT
GAAATTGTTTTAGGATTAGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIDKNSPIPVYYQLKEMIKEKIADGTWQVGQCIASERELTEAYGVSRMTVRQALGELVQEGLLVREKGKGTFVCEPKVKQ
EDMMSFSEIIKKAGRSLITKVIDFEVINTPEELADTFDVEKIYKINRLRLVDGEAVANEVVYIPCEYCGFVTRDDLEGSL
FKLLEEKGHIIESTESSLAAVIMDDELKALFNVNKQVPLLKSHNTALNSEGEIIYVEDAIYRSDKYILEINISKREGKLK

Sequences:

>Translated_240_residues
MIDKNSPIPVYYQLKEMIKEKIADGTWQVGQCIASERELTEAYGVSRMTVRQALGELVQEGLLVREKGKGTFVCEPKVKQ
EDMMSFSEIIKKAGRSLITKVIDFEVINTPEELADTFDVEKIYKINRLRLVDGEAVANEVVYIPCEYCGFVTRDDLEGSL
FKLLEEKGHIIESTESSLAAVIMDDELKALFNVNKQVPLLKSHNTALNSEGEIIYVEDAIYRSDKYILEINISKREGKLK
>Mature_240_residues
MIDKNSPIPVYYQLKEMIKEKIADGTWQVGQCIASERELTEAYGVSRMTVRQALGELVQEGLLVREKGKGTFVCEPKVKQ
EDMMSFSEIIKKAGRSLITKVIDFEVINTPEELADTFDVEKIYKINRLRLVDGEAVANEVVYIPCEYCGFVTRDDLEGSL
FKLLEEKGHIIESTESSLAAVIMDDELKALFNVNKQVPLLKSHNTALNSEGEIIYVEDAIYRSDKYILEINISKREGKLK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=26.4069264069264, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786950, Length=224, Percent_Identity=26.7857142857143, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788418, Length=226, Percent_Identity=28.3185840707965, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082252, Length=235, Percent_Identity=24.6808510638298, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790304, Length=227, Percent_Identity=27.3127753303965, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27221; Mature: 27221

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKNSPIPVYYQLKEMIKEKIADGTWQVGQCIASERELTEAYGVSRMTVRQALGELVQE
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GLLVREKGKGTFVCEPKVKQEDMMSFSEIIKKAGRSLITKVIDFEVINTPEELADTFDVE
CCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCHH
KIYKINRLRLVDGEAVANEVVYIPCEYCGFVTRDDLEGSLFKLLEEKGHIIESTESSLAA
HHHHHCEEEEECCHHHHCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCEEECCCCCEEE
VIMDDELKALFNVNKQVPLLKSHNTALNSEGEIIYVEDAIYRSDKYILEINISKREGKLK
EEECHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEHHEECCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MIDKNSPIPVYYQLKEMIKEKIADGTWQVGQCIASERELTEAYGVSRMTVRQALGELVQE
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GLLVREKGKGTFVCEPKVKQEDMMSFSEIIKKAGRSLITKVIDFEVINTPEELADTFDVE
CCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCHH
KIYKINRLRLVDGEAVANEVVYIPCEYCGFVTRDDLEGSLFKLLEEKGHIIESTESSLAA
HHHHHCEEEEECCHHHHCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCEEECCCCCEEE
VIMDDELKALFNVNKQVPLLKSHNTALNSEGEIIYVEDAIYRSDKYILEINISKREGKLK
EEECHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEHHEECCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]