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The map label for this gene is mrnC [H]

Identifier: 18311408

GI number: 18311408

Start: 2773647

End: 2774057

Strand: Reverse

Name: mrnC [H]

Synonym: CPE2426

Alternate gene names: 18311408

Gene position: 2774057-2773647 (Counterclockwise)

Preceding gene: 18311409

Following gene: 18311407

Centisome position: 91.51

GC content: 29.44

Gene sequence:

>411_bases
TTGAAGAATTTATTATACAGAGAGTTTTCAGAAAGTGAAGCTAGAATGTTAAACCCACTTCAATTAGCTTTAATAGGAGA
TGGAGTTTACGAAGTTTTTATAAGAAACTATATATTAAGTGAAAATGCAGGTTTATCAGCTCACAAAATACATGTTAAAG
CAATACAATATGTAAAAGCTAAGGCACAAAGTGACATAATAAATGCTTTAGAAGGTGAACTAAAGGAAGATGAACTTTAT
ATTTATAAAAGAGGTAGAAATGCTAAGTCAGCAACAGTACCTAAGAATGCAAATGTTAGAGATTATAGAAATGCAACAGG
ATTTGAGGCTTTAGTAGGTTATTTATATCTTACTGGAAAAGAAGAAAGATTAAATGAGTTCTTATTGAAATGTATAGAAG
TTCACGTTTAG

Upstream 100 bases:

>100_bases
ATCTTTGATTGAATTAGATTTGAATTTGTAGTTTAATAGTTTTAAATAAATAAATTCTATATAATTTTTAAATTAAGCTC
AAACAAAAGGAGATAAGATA

Downstream 100 bases:

>100_bases
GAAGGAGAAATATTAATGTTAAAAGTTAAATTATTACAATATACACCAGAACCAGAAAAGACCATAGCAGCAGCGGCTAA
ATTATGCTATAGTCCTGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MKNLLYREFSESEARMLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINALEGELKEDELY
IYKRGRNAKSATVPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLKCIEVHV

Sequences:

>Translated_136_residues
MKNLLYREFSESEARMLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINALEGELKEDELY
IYKRGRNAKSATVPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLKCIEVHV
>Mature_136_residues
MKNLLYREFSESEARMLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINALEGELKEDELY
IYKRGRNAKSATVPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLKCIEVHV

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15540; Mature: 15540

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLLYREFSESEARMLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKA
CCCCHHHHHCCCHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KAQSDIINALEGELKEDELYIYKRGRNAKSATVPKNANVRDYRNATGFEALVGYLYLTGK
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
EERLNEFLLKCIEVHV
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNLLYREFSESEARMLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKA
CCCCHHHHHCCCHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KAQSDIINALEGELKEDELYIYKRGRNAKSATVPKNANVRDYRNATGFEALVGYLYLTGK
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
EERLNEFLLKCIEVHV
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]