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The map label for this gene is radC [C]

Identifier: 18311126

GI number: 18311126

Start: 2455583

End: 2456266

Strand: Reverse

Name: radC [C]

Synonym: CPE2144

Alternate gene names: 18311126

Gene position: 2456266-2455583 (Counterclockwise)

Preceding gene: 18311127

Following gene: 18311125

Centisome position: 81.03

GC content: 31.29

Gene sequence:

>684_bases
ATGTCTAAAAATATAAGAATTAATGAAATTCCATCTGGTGAGAGGCCAAGAGAAAAACTACTTTTTTATGGAGCTCAGTT
TTTATCTAATGAGGAACTTTTAGCTATAATTCTTAGAACTGGAAATAAGGATTCAAATGTAGTTGAATTGTCTTATAGAA
TAATACATAGTGTTGGTGGATTGAATGGACTTTTTAAAGCTTCAGCAAAGGAGCTTATGGAGGTAAAAGGTGTTAAGGAA
GCTAAGGCAACTCAAATTTTAGCTATGTGTGAATTATATAAGAGATTTAAGGTTTCTGAGTTAACGCAGGTTAAAATTTC
AAAGCCATCAGATGTAGCAAAATTAGTTTTAGATGAACTTAGAATGCTACGTCAGGAAGTGTTGATTCTAATAAACCTTG
ATACTAAAAATAAAGTAATATCTAAAAAAGAAATTTTTAAAGGTGGGCTAAATTCTTCTTTAGTACACCCAAGAGAGATA
TTTAGAGAGGCTGTTAAAGATAGCGCAGCGTCTATAATTATATGTCACAATCATCCTTCAGGAGACCCAACACCTAGTAG
AGATGATATAAACATAACAACAAGACTAAAAGAGTGTGGAAAAATGATGGGTATTGAGCTTTTAGATCATTTAATAATAG
GAGATAACAGATTCATAAGTCTTAAAGAAAAAGACATATTGTGA

Upstream 100 bases:

>100_bases
CCCTTGAATAAACTATATAAAGCATTAGAAAACTATGACATAACAATACTTTAAAATTACTTTCAATGGGCATGTTAATT
TCTAAATAAGGAGTTGTAAT

Downstream 100 bases:

>100_bases
TTAGGAAAGGGGATTAAAAATGGGTTTATTTAATTTTGGAATGACAAAAGACATGGGTATAGATTTAGGAACTGCAAATA
CTCTAGTGTTCGTTAAAGGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSKNIRINEIPSGERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGGLNGLFKASAKELMEVKGVKE
AKATQILAMCELYKRFKVSELTQVKISKPSDVAKLVLDELRMLRQEVLILINLDTKNKVISKKEIFKGGLNSSLVHPREI
FREAVKDSAASIIICHNHPSGDPTPSRDDINITTRLKECGKMMGIELLDHLIIGDNRFISLKEKDIL

Sequences:

>Translated_227_residues
MSKNIRINEIPSGERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGGLNGLFKASAKELMEVKGVKE
AKATQILAMCELYKRFKVSELTQVKISKPSDVAKLVLDELRMLRQEVLILINLDTKNKVISKKEIFKGGLNSSLVHPREI
FREAVKDSAASIIICHNHPSGDPTPSRDDINITTRLKECGKMMGIELLDHLIIGDNRFISLKEKDIL
>Mature_226_residues
SKNIRINEIPSGERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGGLNGLFKASAKELMEVKGVKEA
KATQILAMCELYKRFKVSELTQVKISKPSDVAKLVLDELRMLRQEVLILINLDTKNKVISKKEIFKGGLNSSLVHPREIF
REAVKDSAASIIICHNHPSGDPTPSRDDINITTRLKECGKMMGIELLDHLIIGDNRFISLKEKDIL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=210, Percent_Identity=35.2380952380952, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1788997, Length=105, Percent_Identity=39.0476190476191, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI2367100, Length=105, Percent_Identity=38.0952380952381, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788312, Length=113, Percent_Identity=38.0530973451327, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25551; Mature: 25420

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNIRINEIPSGERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGG
CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEHHHHHHHHHHCC
LNGLFKASAKELMEVKGVKEAKATQILAMCELYKRFKVSELTQVKISKPSDVAKLVLDEL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCHHHHHHHHHHH
RMLRQEVLILINLDTKNKVISKKEIFKGGLNSSLVHPREIFREAVKDSAASIIICHNHPS
HHHHHHEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
GDPTPSRDDINITTRLKECGKMMGIELLDHLIIGDNRFISLKEKDIL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure 
SKNIRINEIPSGERPREKLLFYGAQFLSNEELLAIILRTGNKDSNVVELSYRIIHSVGG
CCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEHHHHHHHHHHCC
LNGLFKASAKELMEVKGVKEAKATQILAMCELYKRFKVSELTQVKISKPSDVAKLVLDEL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHEEECCCCHHHHHHHHHHH
RMLRQEVLILINLDTKNKVISKKEIFKGGLNSSLVHPREIFREAVKDSAASIIICHNHPS
HHHHHHEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
GDPTPSRDDINITTRLKECGKMMGIELLDHLIIGDNRFISLKEKDIL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA