| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ppaC [H]
Identifier: 18311037
GI number: 18311037
Start: 2347871
End: 2349520
Strand: Direct
Name: ppaC [H]
Synonym: CPE2055
Alternate gene names: 18311037
Gene position: 2347871-2349520 (Clockwise)
Preceding gene: 18311035
Following gene: 18311046
Centisome position: 77.45
GC content: 32.55
Gene sequence:
>1650_bases ATGAAGGATGTTATATACATTACAGGACATAAAAATCCTGATTCAGATTCAATATGTGCTGCCTTAGCATATGCTGAATT TAAAAACAAAACTCAAGACACTCCTGCTATACCAGTTAGATTAGGAAATGTTAGCCAAGAGACTCAATACATACTTGATT ATTTTGGTGTAGAAGCACCTCAATTTTTAGAAACAGTTAAACTAAAAGTTGAAGATTTAGAAATGGATAAAATAGCTCCA TTAGCTCCAGAAGTTTCATTAAAAATGGCTTGGAACATAATGAGAGATAAAAACTTAAAATCAATCCCTGTTGCTGATGG AAATAACCACTTACTTGGAATGTTATCAACATCAAACATAACTGCAACATACATGGATATTTGGGATAGCAATATTCTTG CTAAAAGTGCTACTTCATTAGATAACATATTAGATACATTATCTGCTGAAGCTCAAAACATAAATGAAGAAAGAAAAGTA TTCCCAGGAAAAGTTGTAGTTGCTGCTATGCAAGCTGAATCTTTAAAAGAATTCATAAGCGAAGGCGACATAGCTATAGC TGGAGATAGAGCTGAAATACAAGCTGAATTAATAGAGTTAAAAGTTTCTTTATTAATAGTAACAGGTGGACATACACCTT CTAAAGAAATAATAGAACTTGCTAAGAAAAATAACATAACTGTTATTACAACTCCTCATGATTCATTCACTGCATCAAGA TTAATCGTTCAAAGTTTACCAGTAGACTATGTTATGACTAAAGATAACTTAGTAGCTGTATCTACTGATGATTTAGTTGA AGATGTAAAAGTAACAATGAGTGAAACTAGATACAGTAACTATCCTGTAATAGATGAAAATAACAAAGTAGTTGGTTCAA TTGCAAGATTCCACTTAATTTCTACTCATAAGAAAAAAGTTATCCAAGTTGACCATAACGAAAGAGGTCAATCAGTACAT GGTTTAGAGGATGCTGAAGTATTAGAGATCATAGACCATCATAGAGTTGCAGATATCCAAACTGGTAACCCTATATACTT CAGAAATGAACCTCTTGGAAGTACTTCAACAATAGTTGCTAAGAGATTCTTCGAAAATGGAATCAGACCATCAAGAGAAG CTGCTGGACTTTTATGTGGAGCTATAATTTCAGACACATTATTATTTAAATCACCAACTTGTACTCCACAAGACGTGAAA ATGTGCAGAAAACTTGCTGAAATAGCAGGAATAGTTCCTGAAACATTTGCTAAAGAAATGTTTAAAGCTGGTACTTCATT AAAAGGAAAGTCTATTGAAGAAATATTCAACGCTGACTTCAAACCTTTCACAATTGAAGGTGTTAAAGTAGGTGTTGCTC AAGTTAACACAATGGACATAGAAGGATTCATGCCTTTAAAAGGTGAAATGTTAGATTACATGAATCAAAAAGCTGAATCA ATGGGATTAGAAATGATTATGTTATTACTTACTGACATAATAAATGAAGGTTCACAAATATTAGTGGCTGGAAGAAGTCC TGAAATAGCTGAAGAAGCATTCAAAGTTAAATTAGAGGACTCAACTACTTTCTTACCTGGAGTTCTTTCAAGAAAGAAAC AAGTTGTACCACCATTAACTCAAATAATCACAACAAGAGTTAGTAAATAA
Upstream 100 bases:
>100_bases TATGATAAAATGAGTGTTGTTAAACTTTACTTTTCATAATTTAGGAATTAAAATATATTCATGAATTAAAAAATTTCGAA TAACAAAGGAGGCAACCTAA
Downstream 100 bases:
>100_bases TTTTAATTAAAATAAAAGCAATCTCTAAATAGAGATTGCTTTTTTATTTCCAATTTAAAATTTTATAATTCTTATTATTT TTCTTATAATTTATTAAATA
Product: putative manganese-dependent inorganic pyrophosphatase
Products: NA
Alternate protein names: Pyrophosphate phospho-hydrolase; PPase [H]
Number of amino acids: Translated: 549; Mature: 549
Protein sequence:
>549_residues MKDVIYITGHKNPDSDSICAALAYAEFKNKTQDTPAIPVRLGNVSQETQYILDYFGVEAPQFLETVKLKVEDLEMDKIAP LAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKV FPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASR LIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHKKKVIQVDHNERGQSVH GLEDAEVLEIIDHHRVADIQTGNPIYFRNEPLGSTSTIVAKRFFENGIRPSREAAGLLCGAIISDTLLFKSPTCTPQDVK MCRKLAEIAGIVPETFAKEMFKAGTSLKGKSIEEIFNADFKPFTIEGVKVGVAQVNTMDIEGFMPLKGEMLDYMNQKAES MGLEMIMLLLTDIINEGSQILVAGRSPEIAEEAFKVKLEDSTTFLPGVLSRKKQVVPPLTQIITTRVSK
Sequences:
>Translated_549_residues MKDVIYITGHKNPDSDSICAALAYAEFKNKTQDTPAIPVRLGNVSQETQYILDYFGVEAPQFLETVKLKVEDLEMDKIAP LAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKV FPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASR LIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHKKKVIQVDHNERGQSVH GLEDAEVLEIIDHHRVADIQTGNPIYFRNEPLGSTSTIVAKRFFENGIRPSREAAGLLCGAIISDTLLFKSPTCTPQDVK MCRKLAEIAGIVPETFAKEMFKAGTSLKGKSIEEIFNADFKPFTIEGVKVGVAQVNTMDIEGFMPLKGEMLDYMNQKAES MGLEMIMLLLTDIINEGSQILVAGRSPEIAEEAFKVKLEDSTTFLPGVLSRKKQVVPPLTQIITTRVSK >Mature_549_residues MKDVIYITGHKNPDSDSICAALAYAEFKNKTQDTPAIPVRLGNVSQETQYILDYFGVEAPQFLETVKLKVEDLEMDKIAP LAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKV FPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASR LIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHKKKVIQVDHNERGQSVH GLEDAEVLEIIDHHRVADIQTGNPIYFRNEPLGSTSTIVAKRFFENGIRPSREAAGLLCGAIISDTLLFKSPTCTPQDVK MCRKLAEIAGIVPETFAKEMFKAGTSLKGKSIEEIFNADFKPFTIEGVKVGVAQVNTMDIEGFMPLKGEMLDYMNQKAES MGLEMIMLLLTDIINEGSQILVAGRSPEIAEEAFKVKLEDSTTFLPGVLSRKKQVVPPLTQIITTRVSK
Specific function: Unknown
COG id: COG1227
COG function: function code C; Inorganic pyrophosphatase/exopolyphosphatase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001807 - InterPro: IPR000644 - InterPro: IPR004097 - InterPro: IPR010766 - InterPro: IPR001667 [H]
Pfam domain/function: PF00571 CBS; PF01368 DHH; PF02833 DHHA2; PF07085 DRTGG [H]
EC number: =3.6.1.1 [H]
Molecular weight: Translated: 60528; Mature: 60528
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDVIYITGHKNPDSDSICAALAYAEFKNKTQDTPAIPVRLGNVSQETQYILDYFGVEAP CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCH QFLETVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI HHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCE TATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFIS EEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEHHHHHHHHHHHC EGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASR CCCEEEECCHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHH LIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI HHHHHCCCCEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHH STHKKKVIQVDHNERGQSVHGLEDAEVLEIIDHHRVADIQTGNPIYFRNEPLGSTSTIVA HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEECCCCCCCHHHHHH KRFFENGIRPSREAAGLLCGAIISDTLLFKSPTCTPQDVKMCRKLAEIAGIVPETFAKEM HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH FKAGTSLKGKSIEEIFNADFKPFTIEGVKVGVAQVNTMDIEGFMPLKGEMLDYMNQKAES HHCCCCCCCCCHHHHHCCCCCEEEECCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHH MGLEMIMLLLTDIINEGSQILVAGRSPEIAEEAFKVKLEDSTTFLPGVLSRKKQVVPPLT HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHEEEECCCCCCCCHHHHCCCCCCCHHH QIITTRVSK HHHHHHCCC >Mature Secondary Structure MKDVIYITGHKNPDSDSICAALAYAEFKNKTQDTPAIPVRLGNVSQETQYILDYFGVEAP CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCH QFLETVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI HHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCE TATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFIS EEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEHHHHHHHHHHHC EGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASR CCCEEEECCHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHH LIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI HHHHHCCCCEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHH STHKKKVIQVDHNERGQSVHGLEDAEVLEIIDHHRVADIQTGNPIYFRNEPLGSTSTIVA HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEECCCCCCCHHHHHH KRFFENGIRPSREAAGLLCGAIISDTLLFKSPTCTPQDVKMCRKLAEIAGIVPETFAKEM HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH FKAGTSLKGKSIEEIFNADFKPFTIEGVKVGVAQVNTMDIEGFMPLKGEMLDYMNQKAES HHCCCCCCCCCHHHHHCCCCCEEEECCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHH MGLEMIMLLLTDIINEGSQILVAGRSPEIAEEAFKVKLEDSTTFLPGVLSRKKQVVPPLT HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHEEEECCCCCCCCHHHHCCCCCCCHHH QIITTRVSK HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]