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The map label for this gene is deoC [H]

Identifier: 18311034

GI number: 18311034

Start: 2343478

End: 2344152

Strand: Reverse

Name: deoC [H]

Synonym: CPE2052

Alternate gene names: 18311034

Gene position: 2344152-2343478 (Counterclockwise)

Preceding gene: 18311036

Following gene: 18311033

Centisome position: 77.33

GC content: 33.33

Gene sequence:

>675_bases
ATGGATAAACAACAATTAGCAAAAATGATAGACCACACTATATTAAAACCAGAAGCTGATAAGGCATCAATAGAAAAGCT
TTGCAAAGAAGCTTTAGAATACAATTTTGCTTCAGTTTGCATAAACCCTACTAATGTAGAATTAGCAGCTAAACTTTTAA
AAGGCAGCGAAGTAAAGGTTTGTACAGTAATAGGTTTCCCTTTAGGAGCAAACACTATGGAAGTTAAAGCTTTTGAAACT
AAAGATGCAATAGCAAAAGGTGCAGACGAAGTTGATATGGTTATAAACATAGGAAGATTAAAAGATAAAGATTATGAATA
TGTAGAGAAAGATATAAAAGCTGTTGTAGATGCGGCTGATAAGAAAGCGCTTACAAAAGTTATAATAGAAACTTGTCTTT
TAACTGAAGAAGAAAAAGTTAAAGCTTGTGAATTAGCTAAAAAAGCAGGAGCAGATTTCGTTAAAACATCAACTGGATTC
TCAACAGGTGGAGCAACTCCAGAAGATATTAAATTAATGAGAGAAACTGTAGGACCAGAAATGGGAGTTAAAGCATCAGG
TGGAGTAAGATCAATAGAAGATGCTGAAGCTGTAATCAAAAATGGTGCTACTAGAATAGGAGCATCAGCTTCAATAGCTA
TATGTGAAGGAAAAGTTTCAGATTCAACATATTAA

Upstream 100 bases:

>100_bases
GTTAAATTTATTCAATGTAAATATTTAAATTATAGACTTATTAGAATTTATATTCTATAATTAGATATGTAATGAAAATG
TTATCTTAGGAGGAAGTATT

Downstream 100 bases:

>100_bases
TATATAACTAAATTAAATAAGATATTTACTTAGTAAAGCCTATAGAAAAATTTCTATAGGCTTTTTTGTCGAAGAAAAAA
ATAAATAAAAAATAGAAAAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDKQQLAKMIDHTILKPEADKASIEKLCKEALEYNFASVCINPTNVELAAKLLKGSEVKVCTVIGFPLGANTMEVKAFET
KDAIAKGADEVDMVINIGRLKDKDYEYVEKDIKAVVDAADKKALTKVIIETCLLTEEEKVKACELAKKAGADFVKTSTGF
STGGATPEDIKLMRETVGPEMGVKASGGVRSIEDAEAVIKNGATRIGASASIAICEGKVSDSTY

Sequences:

>Translated_224_residues
MDKQQLAKMIDHTILKPEADKASIEKLCKEALEYNFASVCINPTNVELAAKLLKGSEVKVCTVIGFPLGANTMEVKAFET
KDAIAKGADEVDMVINIGRLKDKDYEYVEKDIKAVVDAADKKALTKVIIETCLLTEEEKVKACELAKKAGADFVKTSTGF
STGGATPEDIKLMRETVGPEMGVKASGGVRSIEDAEAVIKNGATRIGASASIAICEGKVSDSTY
>Mature_224_residues
MDKQQLAKMIDHTILKPEADKASIEKLCKEALEYNFASVCINPTNVELAAKLLKGSEVKVCTVIGFPLGANTMEVKAFET
KDAIAKGADEVDMVINIGRLKDKDYEYVEKDIKAVVDAADKKALTKVIIETCLLTEEEKVKACELAKKAGADFVKTSTGF
STGGATPEDIKLMRETVGPEMGVKASGGVRSIEDAEAVIKNGATRIGASASIAICEGKVSDSTY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=250, Percent_Identity=29.6, Blast_Score=78, Evalue=6e-15,
Organism=Escherichia coli, GI1790841, Length=202, Percent_Identity=39.1089108910891, Blast_Score=101, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17533015, Length=241, Percent_Identity=27.3858921161826, Blast_Score=73, Evalue=9e-14,
Organism=Drosophila melanogaster, GI19922098, Length=182, Percent_Identity=31.8681318681319, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23926; Mature: 23926

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQQLAKMIDHTILKPEADKASIEKLCKEALEYNFASVCINPTNVELAAKLLKGSEVKV
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCHHHHHHHHCCCCEEE
CTVIGFPLGANTMEVKAFETKDAIAKGADEVDMVINIGRLKDKDYEYVEKDIKAVVDAAD
EEEEECCCCCCCEEEEEECHHHHHHCCCCCEEHEEECCCCCCCCHHHHHHHHHHHHHHHH
KKALTKVIIETCLLTEEEKVKACELAKKAGADFVKTSTGFSTGGATPEDIKLMRETVGPE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHCCCC
MGVKASGGVRSIEDAEAVIKNGATRIGASASIAICEGKVSDSTY
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MDKQQLAKMIDHTILKPEADKASIEKLCKEALEYNFASVCINPTNVELAAKLLKGSEVKV
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCHHHHHHHHCCCCEEE
CTVIGFPLGANTMEVKAFETKDAIAKGADEVDMVINIGRLKDKDYEYVEKDIKAVVDAAD
EEEEECCCCCCCEEEEEECHHHHHHCCCCCEEHEEECCCCCCCCHHHHHHHHHHHHHHHH
KKALTKVIIETCLLTEEEKVKACELAKKAGADFVKTSTGFSTGGATPEDIKLMRETVGPE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHCCCC
MGVKASGGVRSIEDAEAVIKNGATRIGASASIAICEGKVSDSTY
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA