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The map label for this gene is ydcR [C]

Identifier: 18310938

GI number: 18310938

Start: 2244267

End: 2245673

Strand: Reverse

Name: ydcR [C]

Synonym: CPE1956

Alternate gene names: 18310938

Gene position: 2245673-2244267 (Counterclockwise)

Preceding gene: 18310939

Following gene: 18310937

Centisome position: 74.08

GC content: 26.51

Gene sequence:

>1407_bases
ATGAATAAATTTAGTGTGGTTTTTAAAGAGGGTTTATGTAAATACTTAATAATATACGATAATATTAAAAGTTTAATTGA
AAATGGGAAAATATCAGAAGGAGAAAAGTTACCAACTATAAGAGAACTAGCAGACTTTTTAGAAGTTAATAAGGTAACTG
TTATTAATGCTTATAAGAAACTTGTACAAGAAGGATATGCATATCAAGCTCAAGGAAGTGGAACTTATGCTAAAAATAAG
GATGTAGGAAAAAGTTTTAAGCATGATTATAATGATTTATTTAGAAAAATAGCCTCTGGAGATTTAAAAAATTGGATAGA
CTTTACTGGAGAAACTACTAGTGCAAACTTCTTCCAAGTAGAAAAGCTTAAGAAAGTTTTAGACAATGTATTAGTTAGAG
ATGGTGTAGAGGCACTAATGTATAGTGACCCTTTAGGATATTTAGAACTAAGAAGAAGTATAAATGAAGAGTTTTGGAAT
GGAAAAAATAATTTAGATAATATACTTATAATTTCTGGAGCTCAGCAAGGTATTGATATTGTAGGTAAGTCCTTAGTTAA
TATAAATGATAATATTGTAATAGAAAGGCCAACTTATGGGGGAGCACTTTTAGTATTTAAGCTTAGAAGAGCAAATATAT
TAGAAATTTCAATGGAGAAGGATGGTCCTAATATTGAAAAGTTTGAAAATTTATTAAAGAGAAATAAAATAAAGTGTTTT
TATACTATGAGTTACTTTCAGAACCCTACAGGTATAAGTTGTTCTTTAGAAAAAAAGAAAAAAATAATAGAGCTTGCACA
TAAATATGATTTTTACATATTAGAAGATGATTATCTTTCAGAATTAGTTTATTCTAATGATTTAGAGTATATACCATATA
GAAGTTTAGATTCTGAGAGAGTTATATATATAAAAAGTTTCTCTAAAATATTTCTACCAGGTATAAGAATGGGATATTTA
ATAGCACCAGATAAATTTAAAGAGGAATTTCAAGCTTTAAAGTTTAATAGTGATATAGCTACCTCAAGTTTAATGCAAAG
AGCTCTTCAAGATTATATTGCAAAGGGATATTGGAAAGAGCATATAGAAAGATTAAATGAGGAATATTCAAAAAGATATA
ATTTTATAAAAGAACTTATAGATAATAAATTAGGAGATATGGTTTCTTATAGAGAGCCTAAGGGAGGACTTAATTTATTC
TTAAATATAAATAAAAACATAGACATAACTTCTAAAAAGTTATTTTATGAACTGAAAGATAGACAAACTATAATTACTCC
AGGAAGCATATTCTTTAAAAATCCTAATGATGGAGATAAAAGCTTTAGAATTGGATTTTCCCAAATAGATTATAGTAAGA
TAGAAAAAGGAATAGATAATATATACGATGTATTAAAAGGTAGGTAG

Upstream 100 bases:

>100_bases
TTAAGAAAAGTGGAAGAGAGAAATTCTCACCATGTGGACAAAAGCTTACAACAGAAAAAGTATATTTAATAAAAGATAAT
GTTTAAATAAGGTGTAAGAG

Downstream 100 bases:

>100_bases
ATATTATGAATTATATAACGGTAAAAAAAGCAGCTGATGATAGATTTGAAGAGAAAAAATCAGTTTTTATAGGCTATGTT
AAAAGAGTTACAACAGAGGA

Product: GntR family transcriptional regulator/aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MNKFSVVFKEGLCKYLIIYDNIKSLIENGKISEGEKLPTIRELADFLEVNKVTVINAYKKLVQEGYAYQAQGSGTYAKNK
DVGKSFKHDYNDLFRKIASGDLKNWIDFTGETTSANFFQVEKLKKVLDNVLVRDGVEALMYSDPLGYLELRRSINEEFWN
GKNNLDNILIISGAQQGIDIVGKSLVNINDNIVIERPTYGGALLVFKLRRANILEISMEKDGPNIEKFENLLKRNKIKCF
YTMSYFQNPTGISCSLEKKKKIIELAHKYDFYILEDDYLSELVYSNDLEYIPYRSLDSERVIYIKSFSKIFLPGIRMGYL
IAPDKFKEEFQALKFNSDIATSSLMQRALQDYIAKGYWKEHIERLNEEYSKRYNFIKELIDNKLGDMVSYREPKGGLNLF
LNINKNIDITSKKLFYELKDRQTIITPGSIFFKNPNDGDKSFRIGFSQIDYSKIEKGIDNIYDVLKGR

Sequences:

>Translated_468_residues
MNKFSVVFKEGLCKYLIIYDNIKSLIENGKISEGEKLPTIRELADFLEVNKVTVINAYKKLVQEGYAYQAQGSGTYAKNK
DVGKSFKHDYNDLFRKIASGDLKNWIDFTGETTSANFFQVEKLKKVLDNVLVRDGVEALMYSDPLGYLELRRSINEEFWN
GKNNLDNILIISGAQQGIDIVGKSLVNINDNIVIERPTYGGALLVFKLRRANILEISMEKDGPNIEKFENLLKRNKIKCF
YTMSYFQNPTGISCSLEKKKKIIELAHKYDFYILEDDYLSELVYSNDLEYIPYRSLDSERVIYIKSFSKIFLPGIRMGYL
IAPDKFKEEFQALKFNSDIATSSLMQRALQDYIAKGYWKEHIERLNEEYSKRYNFIKELIDNKLGDMVSYREPKGGLNLF
LNINKNIDITSKKLFYELKDRQTIITPGSIFFKNPNDGDKSFRIGFSQIDYSKIEKGIDNIYDVLKGR
>Mature_468_residues
MNKFSVVFKEGLCKYLIIYDNIKSLIENGKISEGEKLPTIRELADFLEVNKVTVINAYKKLVQEGYAYQAQGSGTYAKNK
DVGKSFKHDYNDLFRKIASGDLKNWIDFTGETTSANFFQVEKLKKVLDNVLVRDGVEALMYSDPLGYLELRRSINEEFWN
GKNNLDNILIISGAQQGIDIVGKSLVNINDNIVIERPTYGGALLVFKLRRANILEISMEKDGPNIEKFENLLKRNKIKCF
YTMSYFQNPTGISCSLEKKKKIIELAHKYDFYILEDDYLSELVYSNDLEYIPYRSLDSERVIYIKSFSKIFLPGIRMGYL
IAPDKFKEEFQALKFNSDIATSSLMQRALQDYIAKGYWKEHIERLNEEYSKRYNFIKELIDNKLGDMVSYREPKGGLNLF
LNINKNIDITSKKLFYELKDRQTIITPGSIFFKNPNDGDKSFRIGFSQIDYSKIEKGIDNIYDVLKGR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=403, Percent_Identity=25.3101736972705, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI33469970, Length=403, Percent_Identity=25.3101736972705, Blast_Score=115, Evalue=7e-26,
Organism=Escherichia coli, GI1787710, Length=438, Percent_Identity=24.6575342465753, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1790797, Length=439, Percent_Identity=22.5512528473804, Blast_Score=119, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321236, Length=360, Percent_Identity=22.5, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321929, Length=195, Percent_Identity=27.6923076923077, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356535, Length=375, Percent_Identity=23.4666666666667, Blast_Score=102, Evalue=6e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 54227; Mature: 54227

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFSVVFKEGLCKYLIIYDNIKSLIENGKISEGEKLPTIRELADFLEVNKVTVINAYKK
CCCHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
LVQEGYAYQAQGSGTYAKNKDVGKSFKHDYNDLFRKIASGDLKNWIDFTGETTSANFFQV
HHHCCCEEEECCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHH
EKLKKVLDNVLVRDGVEALMYSDPLGYLELRRSINEEFWNGKNNLDNILIISGAQQGIDI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH
VGKSLVNINDNIVIERPTYGGALLVFKLRRANILEISMEKDGPNIEKFENLLKRNKIKCF
HHHHHEECCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCEEEE
YTMSYFQNPTGISCSLEKKKKIIELAHKYDFYILEDDYLSELVYSNDLEYIPYRSLDSER
EEEHHHCCCCCCEEEHHHHHHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCC
VIYIKSFSKIFLPGIRMGYLIAPDKFKEEFQALKFNSDIATSSLMQRALQDYIAKGYWKE
EEEEECHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HIERLNEEYSKRYNFIKELIDNKLGDMVSYREPKGGLNLFLNINKNIDITSKKLFYELKD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHEECC
RQTIITPGSIFFKNPNDGDKSFRIGFSQIDYSKIEKGIDNIYDVLKGR
CEEEECCCEEEECCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKFSVVFKEGLCKYLIIYDNIKSLIENGKISEGEKLPTIRELADFLEVNKVTVINAYKK
CCCHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
LVQEGYAYQAQGSGTYAKNKDVGKSFKHDYNDLFRKIASGDLKNWIDFTGETTSANFFQV
HHHCCCEEEECCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHH
EKLKKVLDNVLVRDGVEALMYSDPLGYLELRRSINEEFWNGKNNLDNILIISGAQQGIDI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH
VGKSLVNINDNIVIERPTYGGALLVFKLRRANILEISMEKDGPNIEKFENLLKRNKIKCF
HHHHHEECCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCEEEE
YTMSYFQNPTGISCSLEKKKKIIELAHKYDFYILEDDYLSELVYSNDLEYIPYRSLDSER
EEEHHHCCCCCCEEEHHHHHHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCC
VIYIKSFSKIFLPGIRMGYLIAPDKFKEEFQALKFNSDIATSSLMQRALQDYIAKGYWKE
EEEEECHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
HIERLNEEYSKRYNFIKELIDNKLGDMVSYREPKGGLNLFLNINKNIDITSKKLFYELKD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHEECC
RQTIITPGSIFFKNPNDGDKSFRIGFSQIDYSKIEKGIDNIYDVLKGR
CEEEECCCEEEECCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]