| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is spoVD [H]
Identifier: 18310862
GI number: 18310862
Start: 2155331
End: 2157514
Strand: Reverse
Name: spoVD [H]
Synonym: CPE1880
Alternate gene names: 18310862
Gene position: 2157514-2155331 (Counterclockwise)
Preceding gene: 18310863
Following gene: 18310861
Centisome position: 71.17
GC content: 31.41
Gene sequence:
>2184_bases GTGAAAGCAAAAAAGAAAAATAAAAAAATTAAACTTAATGAAGGTAGAGTATTAGCTTTTTTATTAGCCATAGTAATATT ATTTTTAGCCTTATCAGGTAGATTGCTTTACATAAGTATATTTAGATCAAAAGATTATAAGGCTATGGCAGAAGAACAAT GGACCAATGAAATACAAATAGATGCTAGAAGAGGGCGTATCTTAGATAGAAACAATAGGGAGTTAGCAGTTACTGCAAAC GTATTTAGAGTAGATTTAGATTTAATAACCTTAAGAAAATATATTGATAAGAAAGATACTGATAATATTGAAATTGCAAA ATTATTAGCTGAAGCTTTAGAGATGGATGAAGAAAAGGTTTTATCAAGAATAGAGCTTACATATCCATCAGGAAATCCAG CAAACTCTGCTACCTTAATAAGAAGAATAGAAAAGGAAAAGGCTGATAAGGTTAAAGAGCTAGATATAAATGGAGTAATA GTATCAGAGGATACAAAAAGATATTATCCTAATGGAGATTTTCTTTCTCATACTTTAGGAACAACTAATGCAGATGGAGA AGGATTAAGTGGATTAGAACTTTATTATAATGAAGAACTTATGGGAATCCCAGGAGTAAGAGTTAGTGAAGTCTCTGGAA ATAGTACTTCAAACCCTTATTCTGAAACAAGTTTTACTCCACCTGTAGATGGAAAAGATATGACTTTGACAATAGATGAG AATATACAATACTTTGTTGAAAAGGTAGCTGAAGATGCCTTAAATAAACATAATGCAGACTCAGTAAGCATTGCAGTTAT GAATCCTAATAATGGAGAAATTTTAGGAATGGTAAATAAACCTGGATTTAATCCTAATAATCCTTATGAGGGTAGTGAGG CATTTAAGGGGAAAGATGAATCAGCAAAACTACAAAACATGTGGAGAAATACAATTGTTTCAGATGCCTTTGAGCCAGGT TCAATATTTAAAATAATAACTTCTATAGCAGCCATAGAGGAAAACATAGCAGGAAAAGATGAGGTTTATTATTGTGATGG TAGTTTAAATGTAGCAGGAAAAAATATAAAATGTTGGAAACCTGGTGGACATGGAGTACAAAATTTTAACCAAACATTAG AAAATTCATGTAATGTTGCTTTTATGGAAATGGGGGCAAAATTAGGAGCTGAAAAGTTAAATGAATATATTAAACTTTTT GGATTTGGAACTCAATCAGGAATAGATTTACCGGGAGAAGCTACAGGAATAGTTAAAAATGTAGAAGATATAAGTGCTGT GGATTTAGCAACTATATCCTTTGGACAAACTAATACAATGAATGGTATTCAGTTTATGACAGCCTTAAATGCTGTTGCAA ATGGAGGAGATTTAATTCAGCCTCATATTATGAAAGAATTAAGTCATAAGGATGATAATGGAACAAAAATTATAGATGAA GTTTTTGTGCCTAAAATACAAGAAAATATAGTAGATGAAAAAAGTACTATGAGAGTTAAAGAGGCCTTAGAATCTACTGT TTCTAATGGATCTTCAAAGGATGCAGGAATTGAAGGCATAAAAGTAGCAGGAAAAACTGGTACAGCAGAAAAGGTAGATC CTGAAACAGGCACTTATGGAGCAGGATATATAGCGTCCTTTGCTGGATTTGCACCATATGATAATCCACAAGTATCTTTA ATAGTAATAATAGATAATCCTAAAAATGGAGAACATTTTGGAGGAATTGTTGCAGCTCCTTTTGCAGGAGAATTATTTAA TAATATATTTAACTATATTTCATTAAATGAAGGGCAATTAGATGCGAAAGATGAAAGTGTAATAATCCCTGATTTAAGAG GAGATAAGGTAACAAGTGCTGAAAAAACTTTAAATGAATTAGGAATTAATTGTGTAATTGAAGGAGATGGAACCTTTGTT ACTTCAGTTACACCTATACCAGGCTATAAGGTTAAAAAGGGTGATAGTATAACCTTGTATGCTGGAAGTAGATTTGATAG AAATGAAAAGGAAATAGTAGTTCCTGATTTTAGAAAATTAAATAAGGAAGAGGCAGAAGAAATTTTAAAATACTTAGGAT TAAAGGGAGAATTTGAAGGAGAAGGTGAAATTAAGGAGCAGAGCATAAGTGCAGGAGAAATAATAAAAAGTGGAGATAAG ATTAAGTTTAAATTAGAAGGATAA
Upstream 100 bases:
>100_bases TTTTTAGATACAATTTATTAAAAAAAGCATGGGTATATTTATGATATAATCAATTTAAACTTTGAGAATTATGTAAAATT GGTATAGAGGGGGCTGTTAG
Downstream 100 bases:
>100_bases AACTTTAAAAATAAAGAGTTATATCAAATAACATATAATAAATATTATAAACGCTTAATGTTTATGAGATTTATTATTAA CTTTTTGATATAACTCTTTT
Product: stage V sporulation protein D
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 727; Mature: 727
Protein sequence:
>727_residues MKAKKKNKKIKLNEGRVLAFLLAIVILFLALSGRLLYISIFRSKDYKAMAEEQWTNEIQIDARRGRILDRNNRELAVTAN VFRVDLDLITLRKYIDKKDTDNIEIAKLLAEALEMDEEKVLSRIELTYPSGNPANSATLIRRIEKEKADKVKELDINGVI VSEDTKRYYPNGDFLSHTLGTTNADGEGLSGLELYYNEELMGIPGVRVSEVSGNSTSNPYSETSFTPPVDGKDMTLTIDE NIQYFVEKVAEDALNKHNADSVSIAVMNPNNGEILGMVNKPGFNPNNPYEGSEAFKGKDESAKLQNMWRNTIVSDAFEPG SIFKIITSIAAIEENIAGKDEVYYCDGSLNVAGKNIKCWKPGGHGVQNFNQTLENSCNVAFMEMGAKLGAEKLNEYIKLF GFGTQSGIDLPGEATGIVKNVEDISAVDLATISFGQTNTMNGIQFMTALNAVANGGDLIQPHIMKELSHKDDNGTKIIDE VFVPKIQENIVDEKSTMRVKEALESTVSNGSSKDAGIEGIKVAGKTGTAEKVDPETGTYGAGYIASFAGFAPYDNPQVSL IVIIDNPKNGEHFGGIVAAPFAGELFNNIFNYISLNEGQLDAKDESVIIPDLRGDKVTSAEKTLNELGINCVIEGDGTFV TSVTPIPGYKVKKGDSITLYAGSRFDRNEKEIVVPDFRKLNKEEAEEILKYLGLKGEFEGEGEIKEQSISAGEIIKSGDK IKFKLEG
Sequences:
>Translated_727_residues MKAKKKNKKIKLNEGRVLAFLLAIVILFLALSGRLLYISIFRSKDYKAMAEEQWTNEIQIDARRGRILDRNNRELAVTAN VFRVDLDLITLRKYIDKKDTDNIEIAKLLAEALEMDEEKVLSRIELTYPSGNPANSATLIRRIEKEKADKVKELDINGVI VSEDTKRYYPNGDFLSHTLGTTNADGEGLSGLELYYNEELMGIPGVRVSEVSGNSTSNPYSETSFTPPVDGKDMTLTIDE NIQYFVEKVAEDALNKHNADSVSIAVMNPNNGEILGMVNKPGFNPNNPYEGSEAFKGKDESAKLQNMWRNTIVSDAFEPG SIFKIITSIAAIEENIAGKDEVYYCDGSLNVAGKNIKCWKPGGHGVQNFNQTLENSCNVAFMEMGAKLGAEKLNEYIKLF GFGTQSGIDLPGEATGIVKNVEDISAVDLATISFGQTNTMNGIQFMTALNAVANGGDLIQPHIMKELSHKDDNGTKIIDE VFVPKIQENIVDEKSTMRVKEALESTVSNGSSKDAGIEGIKVAGKTGTAEKVDPETGTYGAGYIASFAGFAPYDNPQVSL IVIIDNPKNGEHFGGIVAAPFAGELFNNIFNYISLNEGQLDAKDESVIIPDLRGDKVTSAEKTLNELGINCVIEGDGTFV TSVTPIPGYKVKKGDSITLYAGSRFDRNEKEIVVPDFRKLNKEEAEEILKYLGLKGEFEGEGEIKEQSISAGEIIKSGDK IKFKLEG >Mature_727_residues MKAKKKNKKIKLNEGRVLAFLLAIVILFLALSGRLLYISIFRSKDYKAMAEEQWTNEIQIDARRGRILDRNNRELAVTAN VFRVDLDLITLRKYIDKKDTDNIEIAKLLAEALEMDEEKVLSRIELTYPSGNPANSATLIRRIEKEKADKVKELDINGVI VSEDTKRYYPNGDFLSHTLGTTNADGEGLSGLELYYNEELMGIPGVRVSEVSGNSTSNPYSETSFTPPVDGKDMTLTIDE NIQYFVEKVAEDALNKHNADSVSIAVMNPNNGEILGMVNKPGFNPNNPYEGSEAFKGKDESAKLQNMWRNTIVSDAFEPG SIFKIITSIAAIEENIAGKDEVYYCDGSLNVAGKNIKCWKPGGHGVQNFNQTLENSCNVAFMEMGAKLGAEKLNEYIKLF GFGTQSGIDLPGEATGIVKNVEDISAVDLATISFGQTNTMNGIQFMTALNAVANGGDLIQPHIMKELSHKDDNGTKIIDE VFVPKIQENIVDEKSTMRVKEALESTVSNGSSKDAGIEGIKVAGKTGTAEKVDPETGTYGAGYIASFAGFAPYDNPQVSL IVIIDNPKNGEHFGGIVAAPFAGELFNNIFNYISLNEGQLDAKDESVIIPDLRGDKVTSAEKTLNELGINCVIEGDGTFV TSVTPIPGYKVKKGDSITLYAGSRFDRNEKEIVVPDFRKLNKEEAEEILKYLGLKGEFEGEGEIKEQSISAGEIIKSGDK IKFKLEG
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=628, Percent_Identity=27.3885350318471, Blast_Score=218, Evalue=8e-58, Organism=Escherichia coli, GI1786854, Length=652, Percent_Identity=25.4601226993865, Blast_Score=154, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 79630; Mature: 79630
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAKKKNKKIKLNEGRVLAFLLAIVILFLALSGRLLYISIFRSKDYKAMAEEQWTNEIQI CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCEEEE DARRGRILDRNNRELAVTANVFRVDLDLITLRKYIDKKDTDNIEIAKLLAEALEMDEEKV EECCCCEECCCCCEEEEEEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH LSRIELTYPSGNPANSATLIRRIEKEKADKVKELDINGVIVSEDTKRYYPNGDFLSHTLG HHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCCCCCCCHHHCCC TTNADGEGLSGLELYYNEELMGIPGVRVSEVSGNSTSNPYSETSFTPPVDGKDMTLTIDE CCCCCCCCCCCEEEEECCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC NIQYFVEKVAEDALNKHNADSVSIAVMNPNNGEILGMVNKPGFNPNNPYEGSEAFKGKDE HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCH SAKLQNMWRNTIVSDAFEPGSIFKIITSIAAIEENIAGKDEVYYCDGSLNVAGKNIKCWK HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCEEEEC PGGHGVQNFNQTLENSCNVAFMEMGAKLGAEKLNEYIKLFGFGTQSGIDLPGEATGIVKN CCCCCHHHHHHHHHCCCCEEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC VEDISAVDLATISFGQTNTMNGIQFMTALNAVANGGDLIQPHIMKELSHKDDNGTKIIDE HHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHH VFVPKIQENIVDEKSTMRVKEALESTVSNGSSKDAGIEGIKVAGKTGTAEKVDPETGTYG HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC AGYIASFAGFAPYDNPQVSLIVIIDNPKNGEHFGGIVAAPFAGELFNNIFNYISLNEGQL CHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHEECCCCCC DAKDESVIIPDLRGDKVTSAEKTLNELGINCVIEGDGTFVTSVTPIPGYKVKKGDSITLY CCCCCEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEECCCCEEEEE AGSRFDRNEKEIVVPDFRKLNKEEAEEILKYLGLKGEFEGEGEIKEQSISAGEIIKSGDK ECCCCCCCCCEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHCCCCE IKFKLEG EEEEECC >Mature Secondary Structure MKAKKKNKKIKLNEGRVLAFLLAIVILFLALSGRLLYISIFRSKDYKAMAEEQWTNEIQI CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCEEEE DARRGRILDRNNRELAVTANVFRVDLDLITLRKYIDKKDTDNIEIAKLLAEALEMDEEKV EECCCCEECCCCCEEEEEEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH LSRIELTYPSGNPANSATLIRRIEKEKADKVKELDINGVIVSEDTKRYYPNGDFLSHTLG HHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCCCCCCCHHHCCC TTNADGEGLSGLELYYNEELMGIPGVRVSEVSGNSTSNPYSETSFTPPVDGKDMTLTIDE CCCCCCCCCCCEEEEECCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC NIQYFVEKVAEDALNKHNADSVSIAVMNPNNGEILGMVNKPGFNPNNPYEGSEAFKGKDE HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCH SAKLQNMWRNTIVSDAFEPGSIFKIITSIAAIEENIAGKDEVYYCDGSLNVAGKNIKCWK HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCEEEEC PGGHGVQNFNQTLENSCNVAFMEMGAKLGAEKLNEYIKLFGFGTQSGIDLPGEATGIVKN CCCCCHHHHHHHHHCCCCEEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC VEDISAVDLATISFGQTNTMNGIQFMTALNAVANGGDLIQPHIMKELSHKDDNGTKIIDE HHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHH VFVPKIQENIVDEKSTMRVKEALESTVSNGSSKDAGIEGIKVAGKTGTAEKVDPETGTYG HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC AGYIASFAGFAPYDNPQVSLIVIIDNPKNGEHFGGIVAAPFAGELFNNIFNYISLNEGQL CHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHEECCCCCC DAKDESVIIPDLRGDKVTSAEKTLNELGINCVIEGDGTFVTSVTPIPGYKVKKGDSITLY CCCCCEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEECCCCEEEEE AGSRFDRNEKEIVVPDFRKLNKEEAEEILKYLGLKGEFEGEGEIKEQSISAGEIIKSGDK ECCCCCCCCCEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHCCCCE IKFKLEG EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]