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The map label for this gene is rimM

Identifier: 18310692

GI number: 18310692

Start: 1988685

End: 1989182

Strand: Reverse

Name: rimM

Synonym: CPE1710

Alternate gene names: 18310692

Gene position: 1989182-1988685 (Counterclockwise)

Preceding gene: 18310693

Following gene: 18310691

Centisome position: 65.62

GC content: 28.92

Gene sequence:

>498_bases
ATGGAAGATTTATTAGTAGTTGGTCAAATAATAAACACTCATGGCTTAAGAGGTGAAATGAAAGTTATGCCTTTAACTGA
AGATATGAGAAGATTTGACTATTTAGAATATGTTATCTTAAAAGGAAAAAAGGTTAAAGTAGAGGGCGTAAAATACTTTA
AGGATAAAGTTATACTTAAATTAGAAGGAATAAATTCAATAGAGGAAGCTGAAAAACTAAAAAGAACTTATTTAGAAATA
GAACGTGAAGATGCTATAGAGCTTGAAGAAGATGAATATTTCATAGTTGATTTAGTTGGATGCACTGTTGTTGATACAGA
AGGATTTGAGTATGGAAAAATCAAAGATGTAATCCAAACTCCAAGTAATGATGTTTATTGGGTTCAAGGAAAGAAGGAAG
TATTAGTTCCAGTATTAAAGGATATAGTTTTAGATATTAATATGGATGAAAAATTAATTACTATAAGACCTTCTGGAGAG
TGGCAATATGAAGATTAA

Upstream 100 bases:

>100_bases
GCTGCAATTAAAGAAAATAAAAAAGTTGTAGTAGAAATCATTTAAAAAGAGTTAGGGGAATACCTAACTCTTATTTTATA
TACAGAAAAGGGGTGTAATA

Downstream 100 bases:

>100_bases
TATTCTTACATTGTTCCCAGAGATGTTTGATATATTTAAACATAGCATAATAGGAAGAGCTAGGGAAAATGGTTTTCTAC
ATATAGAGACTATAAATATA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILKLEGINSIEEAEKLKRTYLEI
EREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVIQTPSNDVYWVQGKKEVLVPVLKDIVLDINMDEKLITIRPSGE
WQYED

Sequences:

>Translated_165_residues
MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILKLEGINSIEEAEKLKRTYLEI
EREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVIQTPSNDVYWVQGKKEVLVPVLKDIVLDINMDEKLITIRPSGE
WQYED
>Mature_165_residues
MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILKLEGINSIEEAEKLKRTYLEI
EREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVIQTPSNDVYWVQGKKEVLVPVLKDIVLDINMDEKLITIRPSGE
WQYED

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=148, Percent_Identity=35.1351351351351, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CLOP1 (Q0TPP3)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696397.1
- ProteinModelPortal:   Q0TPP3
- SMR:   Q0TPP3
- STRING:   Q0TPP3
- GeneID:   4203576
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_1964
- TIGR:   CPF_1964
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   IASHRKH
- ProtClustDB:   PRK00122
- BioCyc:   CPER195103:CPF_1964-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19237; Mature: 19237

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILK
CCCCEEEEEHHHCCCCCCCEEEECCHHHHHHHHHHEEEEECCCEEEECCEEEECCEEEEE
LEGINSIEEAEKLKRTYLEIEREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVIQT
ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECEEEEECCCCCCCCHHHHHHC
PSNDVYWVQGKKEVLVPVLKDIVLDINMDEKLITIRPSGEWQYED
CCCCEEEEECCHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILK
CCCCEEEEEHHHCCCCCCCEEEECCHHHHHHHHHHEEEEECCCEEEECCEEEECCEEEEE
LEGINSIEEAEKLKRTYLEIEREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVIQT
ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECEEEEECCCCCCCCHHHHHHC
PSNDVYWVQGKKEVLVPVLKDIVLDINMDEKLITIRPSGEWQYED
CCCCEEEEECCHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA