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The map label for this gene is codY

Identifier: 18310683

GI number: 18310683

Start: 1979521

End: 1980297

Strand: Reverse

Name: codY

Synonym: CPE1701

Alternate gene names: 18310683

Gene position: 1980297-1979521 (Counterclockwise)

Preceding gene: 18310684

Following gene: 18310682

Centisome position: 65.33

GC content: 29.34

Gene sequence:

>777_bases
ATGTCGACACTACTTAGTAAAACTAGAAGATTAAATAAGATTTTACAAAAATCAGGTACTGAAGCTATAGCTTTTGGAGA
TATATGCCAATTATTAAGTGATGTTATGTCGTGTAATGTATATTTAGTTGGAAGAAAAGGTAGAATATTAGGTTATTCTT
TTTCTGAAAAATTTGAATGTGACATAATGAAAGAAAAAGTTGTTGTTGATAGAAAATTCCCAGAAGACTACAATAATAAA
TTAATAAACATTCAAGATACAATTGCAAACATACCTAATAAAGGAATATGTGTTTTTGAAGGGGTAGGAGAATGTTTAAT
CTCTAAAAAAATATCAACTATTGTTCCTATAGTTGGTAATGGAGATAGATTAGGAACTTTATTATTAGCTAGATTTGGGG
AAGAATTTAATGATGATGACCTAGTTTTAGCAGAATATAGTGCTACAATAGTTGGGATGGAGCTTTTAAGAGCTAGACAA
GGTGAGATAGAAGAAGAAGCACGTAAAAAAGCAGTGGTTCAATTAGCTATTGGAACTTTATCTTACTCAGAATTAGAAGC
TGTAGAACATATTTTTAGTGAGTTAAATGGAGATGAAGGATTATTAGTAGCTTCTAAGATAGCTGATAAAGTTGGAATAA
CTAGATCAGTTATAGTAAATGCTCTTAGAAAATTTGAGAGTGCAGGAGTTATTGAGTCAAGAAGTCTTGGAATGAAAGGT
ACTCATATAAAAATATTAAACGAAAAGTTAATGGATGAACTTAAAAAGATAAAATAA

Upstream 100 bases:

>100_bases
AGTATTTACTATGTTAATATTTAAATAATAAGTTTATTATAAGAATATTTTAAAAATTCTGAAATTTACATCTTTTGTAA
AATGGTGCGAGGAGGATATA

Downstream 100 bases:

>100_bases
TATTTGAAGAAGGTGTTTTTTGCATCTTCTTCTTTTTTATATAACAAGCTAATAATAATTAAATAAATATAAAAAATCTA
TGATTTATAACTTTTATAAG

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSTLLSKTRRLNKILQKSGTEAIAFGDICQLLSDVMSCNVYLVGRKGRILGYSFSEKFECDIMKEKVVVDRKFPEDYNNK
LINIQDTIANIPNKGICVFEGVGECLISKKISTIVPIVGNGDRLGTLLLARFGEEFNDDDLVLAEYSATIVGMELLRARQ
GEIEEEARKKAVVQLAIGTLSYSELEAVEHIFSELNGDEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
THIKILNEKLMDELKKIK

Sequences:

>Translated_258_residues
MSTLLSKTRRLNKILQKSGTEAIAFGDICQLLSDVMSCNVYLVGRKGRILGYSFSEKFECDIMKEKVVVDRKFPEDYNNK
LINIQDTIANIPNKGICVFEGVGECLISKKISTIVPIVGNGDRLGTLLLARFGEEFNDDDLVLAEYSATIVGMELLRARQ
GEIEEEARKKAVVQLAIGTLSYSELEAVEHIFSELNGDEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
THIKILNEKLMDELKKIK
>Mature_257_residues
STLLSKTRRLNKILQKSGTEAIAFGDICQLLSDVMSCNVYLVGRKGRILGYSFSEKFECDIMKEKVVVDRKFPEDYNNKL
INIQDTIANIPNKGICVFEGVGECLISKKISTIVPIVGNGDRLGTLLLARFGEEFNDDDLVLAEYSATIVGMELLRARQG
EIEEEARKKAVVQLAIGTLSYSELEAVEHIFSELNGDEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKGT
HIKILNEKLMDELKKIK

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CODY_CLOP1 (Q0TPQ2)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696388.1
- ProteinModelPortal:   Q0TPQ2
- STRING:   Q0TPQ2
- GeneID:   4203122
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_1955
- TIGR:   CPF_1955
- eggNOG:   COG4465
- HOGENOM:   HBG304760
- OMA:   HIFEELD
- ProtClustDB:   PRK04158
- BioCyc:   CPER195103:CPF_1955-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_00621
- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF011572
- TIGRFAMs:   TIGR02787

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY

EC number: NA

Molecular weight: Translated: 28547; Mature: 28415

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLLSKTRRLNKILQKSGTEAIAFGDICQLLSDVMSCNVYLVGRKGRILGYSFSEKFEC
CCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCH
DIMKEKVVVDRKFPEDYNNKLINIQDTIANIPNKGICVFEGVGECLISKKISTIVPIVGN
HHHHHHHHHCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHEEECCC
GDRLGTLLLARFGEEFNDDDLVLAEYSATIVGMELLRARQGEIEEEARKKAVVQLAIGTL
CHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
SYSELEAVEHIFSELNGDEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
CHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCCC
THIKILNEKLMDELKKIK
CCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STLLSKTRRLNKILQKSGTEAIAFGDICQLLSDVMSCNVYLVGRKGRILGYSFSEKFEC
CHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCH
DIMKEKVVVDRKFPEDYNNKLINIQDTIANIPNKGICVFEGVGECLISKKISTIVPIVGN
HHHHHHHHHCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHEEECCC
GDRLGTLLLARFGEEFNDDDLVLAEYSATIVGMELLRARQGEIEEEARKKAVVQLAIGTL
CHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
SYSELEAVEHIFSELNGDEGLLVASKIADKVGITRSVIVNALRKFESAGVIESRSLGMKG
CHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCCC
THIKILNEKLMDELKKIK
CCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA