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The map label for this gene is rbfA

Identifier: 18310667

GI number: 18310667

Start: 1961555

End: 1961905

Strand: Reverse

Name: rbfA

Synonym: CPE1685

Alternate gene names: 18310667

Gene position: 1961905-1961555 (Counterclockwise)

Preceding gene: 18310668

Following gene: 18310666

Centisome position: 64.72

GC content: 29.91

Gene sequence:

>351_bases
ATGGCTAACTTCAGAGGTAAAAGAATAAATGAAGAAGTAAGAAAAGAAGTAAGTGATATCATAAGAAATCAAATAAAAGA
CCCTAGACTAACAGCTATGGTAAGTGTAACTCAAGTTGAAGTTACTAAAGATTTAAGATACGCTAAAGTTTTTGTTAGCC
TATTCGCTAAAAATGATGAAGAAAAAGAGGAAAGCTTAAAGGCTCTAAAAAGTTCAGCTGGATTCATAAGAAGAGAAGTT
GGAAACAGAGTTAAGCTAAGAAGTACTCCTGAAATATTATTTGAAGAAGATAATTCTATAGATAATGCAATGTATATTGA
ATCATTGCTAAACAAAATCAAGGAGAAATAA

Upstream 100 bases:

>100_bases
AGAAAAGTTCAATGACATTAAAGAAGGCGATATAATAGAAGCATATACTATGGAAGCTGTTCAAAGAAAAGAACTTTAAT
TTTATAAAGAGGTGATTTAT

Downstream 100 bases:

>100_bases
AAAATGAGATTTCATGATGTAATATCAATTATAAATAAAAGCAAAAAAATTGGTATAACATATCATGTATCTCCAGATGG
TGATGCCTTAGGTAGTGTCT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MANFRGKRINEEVRKEVSDIIRNQIKDPRLTAMVSVTQVEVTKDLRYAKVFVSLFAKNDEEKEESLKALKSSAGFIRREV
GNRVKLRSTPEILFEEDNSIDNAMYIESLLNKIKEK

Sequences:

>Translated_116_residues
MANFRGKRINEEVRKEVSDIIRNQIKDPRLTAMVSVTQVEVTKDLRYAKVFVSLFAKNDEEKEESLKALKSSAGFIRREV
GNRVKLRSTPEILFEEDNSIDNAMYIESLLNKIKEK
>Mature_115_residues
ANFRGKRINEEVRKEVSDIIRNQIKDPRLTAMVSVTQVEVTKDLRYAKVFVSLFAKNDEEKEESLKALKSSAGFIRREVG
NRVKLRSTPEILFEEDNSIDNAMYIESLLNKIKEK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=110, Percent_Identity=39.0909090909091, Blast_Score=90, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CLOP1 (Q0TPR8)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696372.1
- ProteinModelPortal:   Q0TPR8
- SMR:   Q0TPR8
- STRING:   Q0TPR8
- GeneID:   4202464
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_1939
- TIGR:   CPF_1939
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   CPER195103:CPF_1939-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13449; Mature: 13317

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFRGKRINEEVRKEVSDIIRNQIKDPRLTAMVSVTQVEVTKDLRYAKVFVSLFAKNDE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EKEESLKALKSSAGFIRREVGNRVKLRSTPEILFEEDNSIDNAMYIESLLNKIKEK
HHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHEECCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANFRGKRINEEVRKEVSDIIRNQIKDPRLTAMVSVTQVEVTKDLRYAKVFVSLFAKNDE
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EKEESLKALKSSAGFIRREVGNRVKLRSTPEILFEEDNSIDNAMYIESLLNKIKEK
HHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHEECCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA