Click here to switch to the map view.

The map label for this gene is ydaM [C]

Identifier: 18310542

GI number: 18310542

Start: 1829419

End: 1831110

Strand: Reverse

Name: ydaM [C]

Synonym: CPE1560

Alternate gene names: 18310542

Gene position: 1831110-1829419 (Counterclockwise)

Preceding gene: 18310543

Following gene: 18310539

Centisome position: 60.4

GC content: 26.06

Gene sequence:

>1692_bases
ATGATTAGGGATGTAAATGATAATAAAAAGAAAAAAGTTGATGAAATATTATCAATAGTAAAAGTATCATCATTATTATT
TTCAGCTATGGCTTTTTTACAATACACCTTTAATCTTACAAAGTATAACAATAAATTTTTAGCGTATTACAGTATATTAT
CAATTTTAATAAGTATATTCTTATTATCAACGATTTACATACTTTGGAGTTTAGCTAGTTTAAACAAATATAAAGATCAT
ATAAATAAGATACAATTAATAGAAATAATTTTATTTATGATTATATTTATAATGGCTATATTAGTTTCAGGAGGGAATTC
TAGTAATAATAAATTTTTATTTTTATTTATTATAATAACATCTACAATACAGGGAGGCATGCATAGAGGATGTGTGGTTT
CTGTAGTGTCATCAGCTATTATTTTAGTTATAGATTTGATTTATTCAGGGAATGCTGATGTAAATATTTATTTTCAAAAT
GATTTAATATTAGCAGGAGTATTTGTTTTAACAGCTTGGACATTAGGTTTTTATGTAAAAACTGAAAATGATCACATAAA
GGAATTACAAACCTTGGTTAACGAAGATGGATTAACAGGGGTTTATAATCATAGATATTTTTATGATAAATTAAGAGAGA
AAATGCATATTAGTGAGGTTGAAAATGAGAAACTGTCATTAATATTTATGGATATAGATTATTTTAAGCATTATAACGAT
TTGTATGGACATCAAAAAGGTGATGAAGCATTAAAGAAAATAGGAAAACTTCTAAAAAATATAGCTAGAGAAAATGATTT
AGTAGCTAGATATGGAGGAGAAGAGTTTGCAATAATTTTACCTAATACTTCAGAAGAGGAAGCTACTAAAATTGCAGAAA
GAATTAGAAATAAAGTAGAAAAAACATATTTTGAAGGACAAGAAAATCAACCTAATGCTAATTTTACAGTATCTGTTGGT
ATAGCTGTATTTCCAGATAAAGCTAAAAGTGAGCTAGAATTAGTTAAATGTGCTGATGATGCATTATATAGAGCTAAATT
TTTCCATAAAAATAGAGTTGAAACTTATGTATCTGTTTTAGATGAATTAAAACGAGATTTAAATGAAGAAGAAAATACTC
TTGTCACATCCATAAAAACTTTAATAAGTATTATAAATGCAAAAGATAAATATACGTATAGCCATGTAGAAAGAGTAGTT
ATTTATAGTAGACTTATGGCTAAAAAATTAGGGCTTTCAGAAGATGAGAAAAAGCAGTTAATATATGGAGCTTATATGCA
TGATATAGGTAAAATAAATATACCAAATGAAATATTAACTAAAAAGATGAGACTTACTAAAGAGGAATGGGAGATTTTAA
AGCAACATCCTAAAGATGGAGTAGAAATAATAAAATCAGTAAATTCCTTAAAGAATGTAGTGCCTCTTATTTTATATCAT
CATGAGAGATATGATGGCTTTGGATATCCAGTAGGATTAAAGGAGAAAGAAATACCATACTTAGCAAGGGTATTAACTGT
AATAGATAGTTTTGATGCTATGACTTCAAGTAGGCCTTATAATAAAAGAAAAACTTATGATGAAGGATTAATAGAACTAG
AAAGATGCAGTGGAACTCAATTTGATCCAGAAATAGTTTGTATTTTTAGTGAAGTGGTTAAGGAAAATATAAATGAAATA
CAAGATTTTTAA

Upstream 100 bases:

>100_bases
CACACCAACCAGAGGAACCAAAATCTTTAAGAGATGAATAATTTACCTAAAGGTCGGTTTTAAACCGGCCTTATTTTATA
CTAGATTAGAGAGGGAGAAT

Downstream 100 bases:

>100_bases
AGAGATGTATCATAATACACCTCTTTTTATTTAGTTAAAATCCGATATTATTTTTTCACAGCATAGCTTAGCTGAAGTTA
AAGACATTGATATTCCAGAG

Product: GGDEF/HD domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MIRDVNDNKKKKVDEILSIVKVSSLLFSAMAFLQYTFNLTKYNNKFLAYYSILSILISIFLLSTIYILWSLASLNKYKDH
INKIQLIEIILFMIIFIMAILVSGGNSSNNKFLFLFIIITSTIQGGMHRGCVVSVVSSAIILVIDLIYSGNADVNIYFQN
DLILAGVFVLTAWTLGFYVKTENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYND
LYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANFTVSVG
IAVFPDKAKSELELVKCADDALYRAKFFHKNRVETYVSVLDELKRDLNEEENTLVTSIKTLISIINAKDKYTYSHVERVV
IYSRLMAKKLGLSEDEKKQLIYGAYMHDIGKINIPNEILTKKMRLTKEEWEILKQHPKDGVEIIKSVNSLKNVVPLILYH
HERYDGFGYPVGLKEKEIPYLARVLTVIDSFDAMTSSRPYNKRKTYDEGLIELERCSGTQFDPEIVCIFSEVVKENINEI
QDF

Sequences:

>Translated_563_residues
MIRDVNDNKKKKVDEILSIVKVSSLLFSAMAFLQYTFNLTKYNNKFLAYYSILSILISIFLLSTIYILWSLASLNKYKDH
INKIQLIEIILFMIIFIMAILVSGGNSSNNKFLFLFIIITSTIQGGMHRGCVVSVVSSAIILVIDLIYSGNADVNIYFQN
DLILAGVFVLTAWTLGFYVKTENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYND
LYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANFTVSVG
IAVFPDKAKSELELVKCADDALYRAKFFHKNRVETYVSVLDELKRDLNEEENTLVTSIKTLISIINAKDKYTYSHVERVV
IYSRLMAKKLGLSEDEKKQLIYGAYMHDIGKINIPNEILTKKMRLTKEEWEILKQHPKDGVEIIKSVNSLKNVVPLILYH
HERYDGFGYPVGLKEKEIPYLARVLTVIDSFDAMTSSRPYNKRKTYDEGLIELERCSGTQFDPEIVCIFSEVVKENINEI
QDF
>Mature_563_residues
MIRDVNDNKKKKVDEILSIVKVSSLLFSAMAFLQYTFNLTKYNNKFLAYYSILSILISIFLLSTIYILWSLASLNKYKDH
INKIQLIEIILFMIIFIMAILVSGGNSSNNKFLFLFIIITSTIQGGMHRGCVVSVVSSAIILVIDLIYSGNADVNIYFQN
DLILAGVFVLTAWTLGFYVKTENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYND
LYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANFTVSVG
IAVFPDKAKSELELVKCADDALYRAKFFHKNRVETYVSVLDELKRDLNEEENTLVTSIKTLISIINAKDKYTYSHVERVV
IYSRLMAKKLGLSEDEKKQLIYGAYMHDIGKINIPNEILTKKMRLTKEEWEILKQHPKDGVEIIKSVNSLKNVVPLILYH
HERYDGFGYPVGLKEKEIPYLARVLTVIDSFDAMTSSRPYNKRKTYDEGLIELERCSGTQFDPEIVCIFSEVVKENINEI
QDF

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=41.9889502762431, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=35.0877192982456, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=37.4269005847953, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1787802, Length=281, Percent_Identity=28.8256227758007, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=32.3699421965318, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=35.3293413173653, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=194, Percent_Identity=27.8350515463918, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=33.1395348837209, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=28.7581699346405, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081974, Length=179, Percent_Identity=27.9329608938547, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=32.2368421052632, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64894; Mature: 64894

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDVNDNKKKKVDEILSIVKVSSLLFSAMAFLQYTFNLTKYNNKFLAYYSILSILISIF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LLSTIYILWSLASLNKYKDHINKIQLIEIILFMIIFIMAILVSGGNSSNNKFLFLFIIIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH
STIQGGMHRGCVVSVVSSAIILVIDLIYSGNADVNIYFQNDLILAGVFVLTAWTLGFYVK
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEE
TENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYND
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHH
LYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVE
HHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
KTYFEGQENQPNANFTVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETYVSVL
HHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DELKRDLNEEENTLVTSIKTLISIINAKDKYTYSHVERVVIYSRLMAKKLGLSEDEKKQL
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IYGAYMHDIGKINIPNEILTKKMRLTKEEWEILKQHPKDGVEIIKSVNSLKNVVPLILYH
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
HERYDGFGYPVGLKEKEIPYLARVLTVIDSFDAMTSSRPYNKRKTYDEGLIELERCSGTQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
FDPEIVCIFSEVVKENINEIQDF
CCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRDVNDNKKKKVDEILSIVKVSSLLFSAMAFLQYTFNLTKYNNKFLAYYSILSILISIF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LLSTIYILWSLASLNKYKDHINKIQLIEIILFMIIFIMAILVSGGNSSNNKFLFLFIIIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH
STIQGGMHRGCVVSVVSSAIILVIDLIYSGNADVNIYFQNDLILAGVFVLTAWTLGFYVK
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEE
TENDHIKELQTLVNEDGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYND
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHH
LYGHQKGDEALKKIGKLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVE
HHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
KTYFEGQENQPNANFTVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETYVSVL
HHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DELKRDLNEEENTLVTSIKTLISIINAKDKYTYSHVERVVIYSRLMAKKLGLSEDEKKQL
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IYGAYMHDIGKINIPNEILTKKMRLTKEEWEILKQHPKDGVEIIKSVNSLKNVVPLILYH
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
HERYDGFGYPVGLKEKEIPYLARVLTVIDSFDAMTSSRPYNKRKTYDEGLIELERCSGTQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
FDPEIVCIFSEVVKENINEIQDF
CCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]