| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is cgmA [H]
Identifier: 18310538
GI number: 18310538
Start: 1823828
End: 1825843
Strand: Reverse
Name: cgmA [H]
Synonym: CPE1556
Alternate gene names: 18310538
Gene position: 1825843-1823828 (Counterclockwise)
Preceding gene: 18310539
Following gene: 18310537
Centisome position: 60.23
GC content: 27.53
Gene sequence:
>2016_bases ATGAACAAAAAGTACTTTAAAGAGGTTTTAGGAAATAAAAAAACTTTGAAGAATTTGGGGATTAACGTATTTATTTGGAT TACTCTATCTTTTCTATTAGTATTTTTAGGGGAGTCATTTCATAGAGGATCTATTGAAAATGGAAAGGATTTTTTAGATA ATCAAACAACAGTATTTCTATTAAACTATCTAATATTTTTGATGATTACTTCAATAGCTTTTTTCTTTAAGAAGACTAGA ATGGTTTATGGAATAATAAGCACTATTCTTATGGGCTTTTATATGGCAAGTGGAGTAATACTAGGCTTTAGAGGAACACC ACTTATATGGGCAGATATGTTTTCTTTTAAAGAAGGATTAGCTATAGCAGGAAATTATTTAAACTTAAATATTTTAAAAT ATGCTGTTATAGCCTTAGTAATTATAATTGCAATATTAGTATTGTTATGGTTTAGTGAAAGATATAAAAGTAGAAATAAG GTGATTAATCCATATGGCTTTATAATTTTACCATTATCTATTTTGGCTGTAGGAGCTTTTTATGGAAATGCAAAAGGGAG TATAGAAGTATATAGATGGGATTTGCCAGTTTCCTATGAGAGAAATGGGTTTATGTACTCATTTTTAGATACTGCGGCAG GATTTAAGGTTAAAGAGCCAAGTGATTACAATAAGGCATCTATTGAGAAAATAAAGAATGATATAATTGAAGAATCACAA CTAGCTAGCAATGATACTAAAATGGCATCTGCTATGCCAGCAAAATTTCCTAATATAATAATTGTTCAATTAGAATCATT TATGGATTTACATAGAATAAATGGATTAACTTTTAAAGAGGACCCTATACCAACCTTTAGAAAAATATCTAGTGAATCAA CAAAGGGCTTTTTAAAGGTACCTACTTATGGAGGTGGAACTGTTAGAAGTGAATTTGAAGTGCTAACTGGATTAAGTACT GATTACTTACCAGTAGGTGAAATACCTAACAATAATATACTTAAAAAACAGCCAGTTGAAAGTTTAGCTTATATATTACA TGATTATGGATATGGAACAAATGTTATACATAATTACGAAGGAAATTTTTATAATAGAGACACAGTGTATCCTAACTTAG GATTTGATAAATATATATCTATGGAGTATATGGACAAGCCGAATAATCAATCTTGGCAATATCCAGAGGATGTTTTAAAC ATAGAACCTATAGAAGATATAATATCTAATAATGAAAAGCCACAGTTTATTTATAATGTAACTGTAGAAAGTCATGGAGG ATATTCTTCTTCAGATTTTGAAAATTATACAGTAGATGGAAATTTAGATCAAGAAGAAAAAAATGAACTTCAATGTTACA TAGATAAATTAAGAGGTGTTGATGAATACATAAAAGAACTTTTAGATTATGTAGAATCTTCAGGAGAGCCTACAGTAATA GCTATGTTTGGAGATCATCTACCTTCATTAAAGATAATAAATGATGATGAGAGTGTATTAAAAGATGGAAATAAATATTT AGCTGACTTCTTTATATGGGATAACATTGGCTTACCAAAGGAAAATATAAATATGGAAGCAGAGGAGTTTACAACATATA TATTAGAAAAGCTTAATATGGTGGCAGGAATTATGCCTACTTTCCATAATGCATGCAAGGATGATGAGCATTACAAAGAA GATTTTGAACTTCTTCAATATGACATGCTATTTGGAAATAAATATATCTTAAATGAAAATAAAAATAAATATGAAAAAAC AAATATGAAGATGGGATTAAAGGAAATAACTTTAAATAATTATGATATAAAAGATGATATATTAACTGTAACTGGTGATA ATTTTAATTATAAGAGCAAAATTATTATAAATGGAAAGATTAAAGAAACTAATTTTATAAATGAAAATACATTAACAACT ACTGAAATTCCTTCAAACATTAAAAATATTTCAGTTGGCCAAATAGGAAAGTATGATAAAATACTAAGTAGTAGCAATTC ATTAGAAATAAAATAG
Upstream 100 bases:
>100_bases CATAAAATTCTTAAATAAGTTAGAATAATCAATATAGATTTATAAATTTAATTCTTAATTAAGTCTTGTTTTGTTACATT CGTTCTAAGGGAGGCATAAA
Downstream 100 bases:
>100_bases TACTTTTATTTATTAGCTCTTAGCATAAATTTATCTTTTAAGAATAAAATGTAAATGTTATACTTAATTTAAGAATTACT AAATTATACTAATTTAACAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 671; Mature: 671
Protein sequence:
>671_residues MNKKYFKEVLGNKKTLKNLGINVFIWITLSFLLVFLGESFHRGSIENGKDFLDNQTTVFLLNYLIFLMITSIAFFFKKTR MVYGIISTILMGFYMASGVILGFRGTPLIWADMFSFKEGLAIAGNYLNLNILKYAVIALVIIIAILVLLWFSERYKSRNK VINPYGFIILPLSILAVGAFYGNAKGSIEVYRWDLPVSYERNGFMYSFLDTAAGFKVKEPSDYNKASIEKIKNDIIEESQ LASNDTKMASAMPAKFPNIIIVQLESFMDLHRINGLTFKEDPIPTFRKISSESTKGFLKVPTYGGGTVRSEFEVLTGLST DYLPVGEIPNNNILKKQPVESLAYILHDYGYGTNVIHNYEGNFYNRDTVYPNLGFDKYISMEYMDKPNNQSWQYPEDVLN IEPIEDIISNNEKPQFIYNVTVESHGGYSSSDFENYTVDGNLDQEEKNELQCYIDKLRGVDEYIKELLDYVESSGEPTVI AMFGDHLPSLKIINDDESVLKDGNKYLADFFIWDNIGLPKENINMEAEEFTTYILEKLNMVAGIMPTFHNACKDDEHYKE DFELLQYDMLFGNKYILNENKNKYEKTNMKMGLKEITLNNYDIKDDILTVTGDNFNYKSKIIINGKIKETNFINENTLTT TEIPSNIKNISVGQIGKYDKILSSSNSLEIK
Sequences:
>Translated_671_residues MNKKYFKEVLGNKKTLKNLGINVFIWITLSFLLVFLGESFHRGSIENGKDFLDNQTTVFLLNYLIFLMITSIAFFFKKTR MVYGIISTILMGFYMASGVILGFRGTPLIWADMFSFKEGLAIAGNYLNLNILKYAVIALVIIIAILVLLWFSERYKSRNK VINPYGFIILPLSILAVGAFYGNAKGSIEVYRWDLPVSYERNGFMYSFLDTAAGFKVKEPSDYNKASIEKIKNDIIEESQ LASNDTKMASAMPAKFPNIIIVQLESFMDLHRINGLTFKEDPIPTFRKISSESTKGFLKVPTYGGGTVRSEFEVLTGLST DYLPVGEIPNNNILKKQPVESLAYILHDYGYGTNVIHNYEGNFYNRDTVYPNLGFDKYISMEYMDKPNNQSWQYPEDVLN IEPIEDIISNNEKPQFIYNVTVESHGGYSSSDFENYTVDGNLDQEEKNELQCYIDKLRGVDEYIKELLDYVESSGEPTVI AMFGDHLPSLKIINDDESVLKDGNKYLADFFIWDNIGLPKENINMEAEEFTTYILEKLNMVAGIMPTFHNACKDDEHYKE DFELLQYDMLFGNKYILNENKNKYEKTNMKMGLKEITLNNYDIKDDILTVTGDNFNYKSKIIINGKIKETNFINENTLTT TEIPSNIKNISVGQIGKYDKILSSSNSLEIK >Mature_671_residues MNKKYFKEVLGNKKTLKNLGINVFIWITLSFLLVFLGESFHRGSIENGKDFLDNQTTVFLLNYLIFLMITSIAFFFKKTR MVYGIISTILMGFYMASGVILGFRGTPLIWADMFSFKEGLAIAGNYLNLNILKYAVIALVIIIAILVLLWFSERYKSRNK VINPYGFIILPLSILAVGAFYGNAKGSIEVYRWDLPVSYERNGFMYSFLDTAAGFKVKEPSDYNKASIEKIKNDIIEESQ LASNDTKMASAMPAKFPNIIIVQLESFMDLHRINGLTFKEDPIPTFRKISSESTKGFLKVPTYGGGTVRSEFEVLTGLST DYLPVGEIPNNNILKKQPVESLAYILHDYGYGTNVIHNYEGNFYNRDTVYPNLGFDKYISMEYMDKPNNQSWQYPEDVLN IEPIEDIISNNEKPQFIYNVTVESHGGYSSSDFENYTVDGNLDQEEKNELQCYIDKLRGVDEYIKELLDYVESSGEPTVI AMFGDHLPSLKIINDDESVLKDGNKYLADFFIWDNIGLPKENINMEAEEFTTYILEKLNMVAGIMPTFHNACKDDEHYKE DFELLQYDMLFGNKYILNENKNKYEKTNMKMGLKEITLNNYDIKDDILTVTGDNFNYKSKIIINGKIKETNFINENTLTT TEIPSNIKNISVGQIGKYDKILSSSNSLEIK
Specific function: Unknown
COG id: COG1368
COG function: function code M; Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 76789; Mature: 76789
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKYFKEVLGNKKTLKNLGINVFIWITLSFLLVFLGESFHRGSIENGKDFLDNQTTVFL CCHHHHHHHHCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHH LNYLIFLMITSIAFFFKKTRMVYGIISTILMGFYMASGVILGFRGTPLIWADMFSFKEGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCC AIAGNYLNLNILKYAVIALVIIIAILVLLWFSERYKSRNKVINPYGFIILPLSILAVGAF EEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH YGNAKGSIEVYRWDLPVSYERNGFMYSFLDTAAGFKVKEPSDYNKASIEKIKNDIIEESQ HCCCCCCEEEEEECCCCEECCCCEEEEEHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHH LASNDTKMASAMPAKFPNIIIVQLESFMDLHRINGLTFKEDPIPTFRKISSESTKGFLKV HCCCCHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCEEEE PTYGGGTVRSEFEVLTGLSTDYLPVGEIPNNNILKKQPVESLAYILHDYGYGTNVIHNYE CCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCC GNFYNRDTVYPNLGFDKYISMEYMDKPNNQSWQYPEDVLNIEPIEDIISNNEKPQFIYNV CCEECCCCCCCCCCCHHEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHCCCCCCEEEEEE TVESHGGYSSSDFENYTVDGNLDQEEKNELQCYIDKLRGVDEYIKELLDYVESSGEPTVI EEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEE AMFGDHLPSLKIINDDESVLKDGNKYLADFFIWDNIGLPKENINMEAEEFTTYILEKLNM EEECCCCCCEEEECCCHHHHHCCCCEEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHH VAGIMPTFHNACKDDEHYKEDFELLQYDMLFGNKYILNENKNKYEKTNMKMGLKEITLNN HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCHHHEECCC YDIKDDILTVTGDNFNYKSKIIINGKIKETNFINENTLTTTEIPSNIKNISVGQIGKYDK CCCCCCEEEEECCCCCEEEEEEEECEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH ILSSSNSLEIK HHCCCCCEEEC >Mature Secondary Structure MNKKYFKEVLGNKKTLKNLGINVFIWITLSFLLVFLGESFHRGSIENGKDFLDNQTTVFL CCHHHHHHHHCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHH LNYLIFLMITSIAFFFKKTRMVYGIISTILMGFYMASGVILGFRGTPLIWADMFSFKEGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCC AIAGNYLNLNILKYAVIALVIIIAILVLLWFSERYKSRNKVINPYGFIILPLSILAVGAF EEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH YGNAKGSIEVYRWDLPVSYERNGFMYSFLDTAAGFKVKEPSDYNKASIEKIKNDIIEESQ HCCCCCCEEEEEECCCCEECCCCEEEEEHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHH LASNDTKMASAMPAKFPNIIIVQLESFMDLHRINGLTFKEDPIPTFRKISSESTKGFLKV HCCCCHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCEEEE PTYGGGTVRSEFEVLTGLSTDYLPVGEIPNNNILKKQPVESLAYILHDYGYGTNVIHNYE CCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCC GNFYNRDTVYPNLGFDKYISMEYMDKPNNQSWQYPEDVLNIEPIEDIISNNEKPQFIYNV CCEECCCCCCCCCCCHHEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHCCCCCCEEEEEE TVESHGGYSSSDFENYTVDGNLDQEEKNELQCYIDKLRGVDEYIKELLDYVESSGEPTVI EEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEE AMFGDHLPSLKIINDDESVLKDGNKYLADFFIWDNIGLPKENINMEAEEFTTYILEKLNM EEECCCCCCEEEECCCHHHHHCCCCEEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHH VAGIMPTFHNACKDDEHYKEDFELLQYDMLFGNKYILNENKNKYEKTNMKMGLKEITLNN HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCHHHEECCC YDIKDDILTVTGDNFNYKSKIIINGKIKETNFINENTLTTTEIPSNIKNISVGQIGKYDK CCCCCCEEEEECCCCCEEEEEEEECEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH ILSSSNSLEIK HHCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10419956; 11481430 [H]