| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310511
Identifier: 18310511
GI number: 18310511
Start: 1790912
End: 1792249
Strand: Direct
Name: 18310511
Synonym: CPE1529
Alternate gene names: NA
Gene position: 1790912-1792249 (Clockwise)
Preceding gene: 18310506
Following gene: 18310521
Centisome position: 59.08
GC content: 27.2
Gene sequence:
>1338_bases ATGAAAAAACTTTTTACAACTTCCCTATTAATTCTTTCAATGATTTTTTTAATAGGATGTGGATCTAAAGGGGAAAGCAA AAACTTTGGGCTATCTGTATTTGGATTAGAAAAATTTTCAGGACTAGATAAACCTGAAGATAATATTAAAATAAATCTAA ATGGTAAAGTTCAAGACTTAAGCTTACCAATATACTTAGATAAAAATAGATATCTAATTCCTATAAGCGAAATAATCAAA AATAACAATGGGGAGTTTAAAATAGAGGATGATTTTTTAAATATTAAATTTGAAAATAAAGATATTAAAGTTAATTTAAA AGATAATACTTGGACTAATTTATCAAAGGAAGAATCAGAGGCTAATAAATTTAAAATTGACCCTATAATAAAAGATGATA CTGTATATATGTCTTTAATTGACTTTGCTAATATGTTTGATTTAAAAAGCAGATGGAACTCAAAGGACAAGCTAATAAAA TTATATAATAATAAAGATATGTTAGATGTTAAACCCTATAAGGGAAAAGGCCCTCAAAAAGGTATTATAAGATTTGAAGA TGTTGCATCTACTGGTGCTGGAACAGAATATGATTCACAATATCTTGAAACTATAAGAGTTATGGGGAGATATTTAGGTA AAAAAAATGTACCTTACCATATAGCTTGGATACCTAGATATATAGACCCAGAAAAGAAAATAGACAATGACCCTTCTAAA GAAAATAACTTTGCTAATGCTGAGCTTGTATACACTTTAGACTTTGTAGCTTCTCATAAAGGGGAAATAGGTTTACATGG TTATACCCATCAAATAGACAATACAATTAGTGGTCATGGCTTTGAATTTGGAAAATATAACCCCTCTGTGGAGGATTTAA ATACAAGAGTTGATAAAGCTCTTCAAATAGCTAAAGATCTTGATATAAAAATAAACTTCTTTGAAGCTCCTCATTACACT ATAAATAAAGCTCAAAATGAAGCTTTAGAAAAGAACTTTAAATATATATTTAATGATTATGATGAAAATAAAGCACAATC AAAGCCTATGAAATCACCAACTGGAAGTGGTTCTTATTATGTACCTACACCTCTATATTATATTGAGGGCGGTAAAGAAA ATGATATGTTAAATAAGATAAAAAACATGTCTAATACTACTTTTGCTGGAATGTTTTATCATCCATTTTTAGAAGCTAAA CTAATAGATTTTAAAGATGGACAAGATGGTTATCCTGAAGATAATTATAAAAAACCATCTATAATCCAAAAAGTAATTGA TGAATTTGAAAAAAGAAATGTATCTATTATTTCAATAGAACAAGTTTCTGAAAAATAA
Upstream 100 bases:
>100_bases TAATTTGTAAAATATTATTATAAATGTACACTTTTTTATGAATTTATTAAGTTTACAATTCTATTTAATTATAATTTAAA TTAATACAAGGAGGCACTAT
Downstream 100 bases:
>100_bases ATTTCACTTTTAAAGAAAGGTTAAGTTAAAATTATTTATTTTAACTTAACCTTTAATTAATTTTAATTATTTATTATTTT TTACCTCTTCCCATATCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDLSLPIYLDKNRYLIPISEIIK NNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESEANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIK LYNNKDMLDVKPYKGKGPQKGIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKALQIAKDLDIKINFFEAPHYT INKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYYVPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAK LIDFKDGQDGYPEDNYKKPSIIQKVIDEFEKRNVSIISIEQVSEK
Sequences:
>Translated_445_residues MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDLSLPIYLDKNRYLIPISEIIK NNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESEANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIK LYNNKDMLDVKPYKGKGPQKGIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKALQIAKDLDIKINFFEAPHYT INKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYYVPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAK LIDFKDGQDGYPEDNYKKPSIIQKVIDEFEKRNVSIISIEQVSEK >Mature_445_residues MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDLSLPIYLDKNRYLIPISEIIK NNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESEANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIK LYNNKDMLDVKPYKGKGPQKGIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKALQIAKDLDIKINFFEAPHYT INKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYYVPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAK LIDFKDGQDGYPEDNYKKPSIIQKVIDEFEKRNVSIISIEQVSEK
Specific function: Unknown
COG id: COG5298
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51127; Mature: 51127
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDL CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCEEEEECCEEEEE SLPIYLDKNRYLIPISEIIKNNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESE EEEEEECCCCEEEEHHHHHCCCCCCEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCC ANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIKLYNNKDMLDVKPYKGKGPQK CCEEEECCEECCCHHEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCC GIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK CCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCCC ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKA CCCCCCEEEEEEEEEHHCCCCCEEECCCHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHH LQIAKDLDIKINFFEAPHYTINKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYY HHHHHCCCEEEEEEECCCCEECHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCCCCCEE VPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAKLIDFKDGQDGYPEDNYKKPS ECCCEEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHH IIQKVIDEFEKRNVSIISIEQVSEK HHHHHHHHHHHCCEEEEEECCCCCC >Mature Secondary Structure MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDL CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCEEEEECCEEEEE SLPIYLDKNRYLIPISEIIKNNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESE EEEEEECCCCEEEEHHHHHCCCCCCEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCC ANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIKLYNNKDMLDVKPYKGKGPQK CCEEEECCEECCCHHEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCC GIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK CCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCCC ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKA CCCCCCEEEEEEEEEHHCCCCCEEECCCHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHH LQIAKDLDIKINFFEAPHYTINKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYY HHHHHCCCEEEEEEECCCCEECHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCCCCCEE VPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAKLIDFKDGQDGYPEDNYKKPS ECCCEEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHH IIQKVIDEFEKRNVSIISIEQVSEK HHHHHHHHHHHCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA