Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310511

Identifier: 18310511

GI number: 18310511

Start: 1790912

End: 1792249

Strand: Direct

Name: 18310511

Synonym: CPE1529

Alternate gene names: NA

Gene position: 1790912-1792249 (Clockwise)

Preceding gene: 18310506

Following gene: 18310521

Centisome position: 59.08

GC content: 27.2

Gene sequence:

>1338_bases
ATGAAAAAACTTTTTACAACTTCCCTATTAATTCTTTCAATGATTTTTTTAATAGGATGTGGATCTAAAGGGGAAAGCAA
AAACTTTGGGCTATCTGTATTTGGATTAGAAAAATTTTCAGGACTAGATAAACCTGAAGATAATATTAAAATAAATCTAA
ATGGTAAAGTTCAAGACTTAAGCTTACCAATATACTTAGATAAAAATAGATATCTAATTCCTATAAGCGAAATAATCAAA
AATAACAATGGGGAGTTTAAAATAGAGGATGATTTTTTAAATATTAAATTTGAAAATAAAGATATTAAAGTTAATTTAAA
AGATAATACTTGGACTAATTTATCAAAGGAAGAATCAGAGGCTAATAAATTTAAAATTGACCCTATAATAAAAGATGATA
CTGTATATATGTCTTTAATTGACTTTGCTAATATGTTTGATTTAAAAAGCAGATGGAACTCAAAGGACAAGCTAATAAAA
TTATATAATAATAAAGATATGTTAGATGTTAAACCCTATAAGGGAAAAGGCCCTCAAAAAGGTATTATAAGATTTGAAGA
TGTTGCATCTACTGGTGCTGGAACAGAATATGATTCACAATATCTTGAAACTATAAGAGTTATGGGGAGATATTTAGGTA
AAAAAAATGTACCTTACCATATAGCTTGGATACCTAGATATATAGACCCAGAAAAGAAAATAGACAATGACCCTTCTAAA
GAAAATAACTTTGCTAATGCTGAGCTTGTATACACTTTAGACTTTGTAGCTTCTCATAAAGGGGAAATAGGTTTACATGG
TTATACCCATCAAATAGACAATACAATTAGTGGTCATGGCTTTGAATTTGGAAAATATAACCCCTCTGTGGAGGATTTAA
ATACAAGAGTTGATAAAGCTCTTCAAATAGCTAAAGATCTTGATATAAAAATAAACTTCTTTGAAGCTCCTCATTACACT
ATAAATAAAGCTCAAAATGAAGCTTTAGAAAAGAACTTTAAATATATATTTAATGATTATGATGAAAATAAAGCACAATC
AAAGCCTATGAAATCACCAACTGGAAGTGGTTCTTATTATGTACCTACACCTCTATATTATATTGAGGGCGGTAAAGAAA
ATGATATGTTAAATAAGATAAAAAACATGTCTAATACTACTTTTGCTGGAATGTTTTATCATCCATTTTTAGAAGCTAAA
CTAATAGATTTTAAAGATGGACAAGATGGTTATCCTGAAGATAATTATAAAAAACCATCTATAATCCAAAAAGTAATTGA
TGAATTTGAAAAAAGAAATGTATCTATTATTTCAATAGAACAAGTTTCTGAAAAATAA

Upstream 100 bases:

>100_bases
TAATTTGTAAAATATTATTATAAATGTACACTTTTTTATGAATTTATTAAGTTTACAATTCTATTTAATTATAATTTAAA
TTAATACAAGGAGGCACTAT

Downstream 100 bases:

>100_bases
ATTTCACTTTTAAAGAAAGGTTAAGTTAAAATTATTTATTTTAACTTAACCTTTAATTAATTTTAATTATTTATTATTTT
TTACCTCTTCCCATATCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDLSLPIYLDKNRYLIPISEIIK
NNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESEANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIK
LYNNKDMLDVKPYKGKGPQKGIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK
ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKALQIAKDLDIKINFFEAPHYT
INKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYYVPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAK
LIDFKDGQDGYPEDNYKKPSIIQKVIDEFEKRNVSIISIEQVSEK

Sequences:

>Translated_445_residues
MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDLSLPIYLDKNRYLIPISEIIK
NNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESEANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIK
LYNNKDMLDVKPYKGKGPQKGIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK
ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKALQIAKDLDIKINFFEAPHYT
INKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYYVPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAK
LIDFKDGQDGYPEDNYKKPSIIQKVIDEFEKRNVSIISIEQVSEK
>Mature_445_residues
MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDLSLPIYLDKNRYLIPISEIIK
NNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESEANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIK
LYNNKDMLDVKPYKGKGPQKGIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK
ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKALQIAKDLDIKINFFEAPHYT
INKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYYVPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAK
LIDFKDGQDGYPEDNYKKPSIIQKVIDEFEKRNVSIISIEQVSEK

Specific function: Unknown

COG id: COG5298

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51127; Mature: 51127

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCEEEEECCEEEEE
SLPIYLDKNRYLIPISEIIKNNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESE
EEEEEECCCCEEEEHHHHHCCCCCCEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCC
ANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIKLYNNKDMLDVKPYKGKGPQK
CCEEEECCEECCCHHEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCC
GIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK
CCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCCC
ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKA
CCCCCCEEEEEEEEEHHCCCCCEEECCCHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHH
LQIAKDLDIKINFFEAPHYTINKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYY
HHHHHCCCEEEEEEECCCCEECHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCCCCCEE
VPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAKLIDFKDGQDGYPEDNYKKPS
ECCCEEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHH
IIQKVIDEFEKRNVSIISIEQVSEK
HHHHHHHHHHHCCEEEEEECCCCCC
>Mature Secondary Structure
MKKLFTTSLLILSMIFLIGCGSKGESKNFGLSVFGLEKFSGLDKPEDNIKINLNGKVQDL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCEEEEECCEEEEE
SLPIYLDKNRYLIPISEIIKNNNGEFKIEDDFLNIKFENKDIKVNLKDNTWTNLSKEESE
EEEEEECCCCEEEEHHHHHCCCCCCEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCC
ANKFKIDPIIKDDTVYMSLIDFANMFDLKSRWNSKDKLIKLYNNKDMLDVKPYKGKGPQK
CCEEEECCEECCCHHEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCC
GIIRFEDVASTGAGTEYDSQYLETIRVMGRYLGKKNVPYHIAWIPRYIDPEKKIDNDPSK
CCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCCC
ENNFANAELVYTLDFVASHKGEIGLHGYTHQIDNTISGHGFEFGKYNPSVEDLNTRVDKA
CCCCCCEEEEEEEEEHHCCCCCEEECCCHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHH
LQIAKDLDIKINFFEAPHYTINKAQNEALEKNFKYIFNDYDENKAQSKPMKSPTGSGSYY
HHHHHCCCEEEEEEECCCCEECHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCCCCCEE
VPTPLYYIEGGKENDMLNKIKNMSNTTFAGMFYHPFLEAKLIDFKDGQDGYPEDNYKKPS
ECCCEEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHH
IIQKVIDEFEKRNVSIISIEQVSEK
HHHHHHHHHHHCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA