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The map label for this gene is virR [H]

Identifier: 18310483

GI number: 18310483

Start: 1753301

End: 1754011

Strand: Reverse

Name: virR [H]

Synonym: CPE1501

Alternate gene names: 18310483

Gene position: 1754011-1753301 (Counterclockwise)

Preceding gene: 18310484

Following gene: 18310482

Centisome position: 57.86

GC content: 25.88

Gene sequence:

>711_bases
ATGTTTAGTATTGCCTTATGTGAAGATAATTCCTTGCAAAGAGAAGAATTAAAAAATAATTTAAGTAAAGTTTTGGATGA
AATAGGAGTAGAGTATAAACTTTTAACCTTTGAGACAGGAGAGGATCTATTAAGGGAATATCCAGAAAATTTGGACATGC
TTTTTTTAGATATTCAAATGGGTGAGTTAACAGGAATGGAGACTGCTAGAAAGGTTAGAAAGTATGATGATAAAGTTGAA
ATTATATTTATAACTGCTTTATGGGATTATATTCAAAAAGGTTATGAAGTTCGTGCTTTTAGATATTTAATAAAGCCAGT
TAAATTTAAGGAGCTACAAGAGCAGGTTACAGCTTGTGTAGAAAATATTTTACATAAAAGATATACATACATAACAATAA
AAGATAAAAATAATGTTTTAAAGATTAGAACAGAAGATATACTTTTTCTTGAGACTTTTGAGAGAAAGGTAATAATACAT
ACTAATTCTCAAGATTATATAGTAAAGATGAGTATGAATAAACTAGAAAAGGAGCTTAATAATAAGGGCTTTTTTAGATG
TCATACTAGTTATATTGTAAATTTAATAAAGATAGAAGAGATTAAAAAGGATTATCTTTTAATAAATAAATTTACTTTAC
CTGTAAGTAAGCATAGAATGAAAAATTTAAAATTAAGGTTAACTAGCCTTTTAGGGGATTTAATATGTTAA

Upstream 100 bases:

>100_bases
CATTTTAAGATTTCAAATTTGTTTTATAAACTTAAGCAATATAGAATAAAATATGATAAAATTACATAAGAAATATAAGT
TGAAAAGGAGATTATTAGAC

Downstream 100 bases:

>100_bases
TGAATCAAATGTTTTGGGACTTCATGGAGAATGCTTCCATGATTATAGAATGGGTAAGTTTTTATTTGATTATAAGTCAA
TTTAGCCCTAAGAAAAGAAA

Product: DNA-binding response regulator, LytTr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MFSIALCEDNSLQREELKNNLSKVLDEIGVEYKLLTFETGEDLLREYPENLDMLFLDIQMGELTGMETARKVRKYDDKVE
IIFITALWDYIQKGYEVRAFRYLIKPVKFKELQEQVTACVENILHKRYTYITIKDKNNVLKIRTEDILFLETFERKVIIH
TNSQDYIVKMSMNKLEKELNNKGFFRCHTSYIVNLIKIEEIKKDYLLINKFTLPVSKHRMKNLKLRLTSLLGDLIC

Sequences:

>Translated_236_residues
MFSIALCEDNSLQREELKNNLSKVLDEIGVEYKLLTFETGEDLLREYPENLDMLFLDIQMGELTGMETARKVRKYDDKVE
IIFITALWDYIQKGYEVRAFRYLIKPVKFKELQEQVTACVENILHKRYTYITIKDKNNVLKIRTEDILFLETFERKVIIH
TNSQDYIVKMSMNKLEKELNNKGFFRCHTSYIVNLIKIEEIKKDYLLINKFTLPVSKHRMKNLKLRLTSLLGDLIC
>Mature_236_residues
MFSIALCEDNSLQREELKNNLSKVLDEIGVEYKLLTFETGEDLLREYPENLDMLFLDIQMGELTGMETARKVRKYDDKVE
IIFITALWDYIQKGYEVRAFRYLIKPVKFKELQEQVTACVENILHKRYTYITIKDKNNVLKIRTEDILFLETFERKVIIH
TNSQDYIVKMSMNKLEKELNNKGFFRCHTSYIVNLIKIEEIKKDYLLINKFTLPVSKHRMKNLKLRLTSLLGDLIC

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=241, Percent_Identity=26.9709543568465, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87082052, Length=255, Percent_Identity=24.3137254901961, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28094; Mature: 28094

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSIALCEDNSLQREELKNNLSKVLDEIGVEYKLLTFETGEDLLREYPENLDMLFLDIQM
CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCEEEEEEEE
GELTGMETARKVRKYDDKVEIIFITALWDYIQKGYEVRAFRYLIKPVKFKELQEQVTACV
CCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHH
ENILHKRYTYITIKDKNNVLKIRTEDILFLETFERKVIIHTNSQDYIVKMSMNKLEKELN
HHHHHCCEEEEEEECCCCEEEEEECCEEEEEECCCEEEEEECCCCEEEEEHHHHHHHHHC
NKGFFRCHTSYIVNLIKIEEIKKDYLLINKFTLPVSKHRMKNLKLRLTSLLGDLIC
CCCEEEEEHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFSIALCEDNSLQREELKNNLSKVLDEIGVEYKLLTFETGEDLLREYPENLDMLFLDIQM
CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCEEEEEEEE
GELTGMETARKVRKYDDKVEIIFITALWDYIQKGYEVRAFRYLIKPVKFKELQEQVTACV
CCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHH
ENILHKRYTYITIKDKNNVLKIRTEDILFLETFERKVIIHTNSQDYIVKMSMNKLEKELN
HHHHHCCEEEEEEECCCCEEEEEECCEEEEEECCCEEEEEECCCCEEEEEHHHHHHHHHC
NKGFFRCHTSYIVNLIKIEEIKKDYLLINKFTLPVSKHRMKNLKLRLTSLLGDLIC
CCCEEEEEHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]