Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310471

Identifier: 18310471

GI number: 18310471

Start: 1743060

End: 1743917

Strand: Reverse

Name: 18310471

Synonym: CPE1489

Alternate gene names: NA

Gene position: 1743917-1743060 (Counterclockwise)

Preceding gene: 18310472

Following gene: 18310470

Centisome position: 57.53

GC content: 29.95

Gene sequence:

>858_bases
ATGGGAAGAACTAACATAAGTTACGGAGCTAAGGATATTTTATATAAGCTTATGGGACAACTTTATAAAGGAAAACCATT
AGAAATTTTAGGAGTTAATGATATGCCTAAAATAATGGACAGGCTACCAAGAAACTTTTTTGAAAATGAAGTTTCAGAGG
GAGGGCCTAATGAAATATTTATTTTAGAAGATGGCTCTATTTTACTTTTTGGATATGAGGATGAAAAAAATATAGATGAA
AATATGTTTATATACTTAGAGGTGGCTGTTAAGGTTATAAAGAGATATTATAAGCATAGAGGAGCCTTTCCAAAGGTTAG
AATGGCTATAATTTATAATTCAAGTGTTAAGGAAGCTAGAAACACATTAAGTTTTGGAGATATACTTATTTGTTCAGAAA
GCATATTTATGAATAAGCTAACTGCGGAGAAAGTTTTAAAAGGGTTAAAGGAGAAGGTTTTAGAAGATAATTTAACTCAA
GCTGATAAGATAAAATTCATAATGTTGCCACTTATGAAGAGTGAGCATGATGATAGCAATATTTTAAGAGATTGTGTTCA
GTTAGCAAAATCAATAAAATCTGAAAGAGATGAGGCAATTATATTAAATGGAATAATTGAATCTACAGATAAGTTTATTA
GTGAAGAAGAAGCAAGAGAACTTAAGGAGTTGTTAGAAATGACTAAGATTGAGAGATTATATAATGAAGAAAGAGATTTA
GCTGTTAAAAATGCAAGAAAAGAAGAGCAATTAAGAATAGCAAAAAGCCTTGCAGGTATATTATCACCTGAGTTAATATC
AGAAAAGCTAGGTATAACAATAGAGGAAATTTACGAGCTTCAAAATGCAGAAGGCTAA

Upstream 100 bases:

>100_bases
AAACTTTTTAATTTAGGCCTAGATGAAATATATATGTAAATAAAATGTGATATAATAATTGAAAAGAATATATTCTCAAC
AAAGTGAGGGTGATAAAAAC

Downstream 100 bases:

>100_bases
AGAGAATAGAAAAATTTACTTTTAATAAAAAAGCTTTGGATGAGAATAATTTTTAGAGATGAAAGTTATTTTCCACCAAA
GCTTATTTTAGTATTTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MGRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIFILEDGSILLFGYEDEKNIDE
NMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEARNTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQ
ADKIKFIMLPLMKSEHDDSNILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL
AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG

Sequences:

>Translated_285_residues
MGRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIFILEDGSILLFGYEDEKNIDE
NMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEARNTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQ
ADKIKFIMLPLMKSEHDDSNILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL
AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG
>Mature_284_residues
GRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIFILEDGSILLFGYEDEKNIDEN
MFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEARNTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQA
DKIKFIMLPLMKSEHDDSNILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDLA
VKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32710; Mature: 32579

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIF
CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
ILEDGSILLFGYEDEKNIDENMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEAR
EEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHH
NTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQADKIKFIMLPLMKSEHDDSN
HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHCCCCCHH
ILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG
HHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure 
GRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIF
CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
ILEDGSILLFGYEDEKNIDENMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEAR
EEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHH
NTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQADKIKFIMLPLMKSEHDDSN
HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHCCCCCHH
ILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG
HHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA