| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310471
Identifier: 18310471
GI number: 18310471
Start: 1743060
End: 1743917
Strand: Reverse
Name: 18310471
Synonym: CPE1489
Alternate gene names: NA
Gene position: 1743917-1743060 (Counterclockwise)
Preceding gene: 18310472
Following gene: 18310470
Centisome position: 57.53
GC content: 29.95
Gene sequence:
>858_bases ATGGGAAGAACTAACATAAGTTACGGAGCTAAGGATATTTTATATAAGCTTATGGGACAACTTTATAAAGGAAAACCATT AGAAATTTTAGGAGTTAATGATATGCCTAAAATAATGGACAGGCTACCAAGAAACTTTTTTGAAAATGAAGTTTCAGAGG GAGGGCCTAATGAAATATTTATTTTAGAAGATGGCTCTATTTTACTTTTTGGATATGAGGATGAAAAAAATATAGATGAA AATATGTTTATATACTTAGAGGTGGCTGTTAAGGTTATAAAGAGATATTATAAGCATAGAGGAGCCTTTCCAAAGGTTAG AATGGCTATAATTTATAATTCAAGTGTTAAGGAAGCTAGAAACACATTAAGTTTTGGAGATATACTTATTTGTTCAGAAA GCATATTTATGAATAAGCTAACTGCGGAGAAAGTTTTAAAAGGGTTAAAGGAGAAGGTTTTAGAAGATAATTTAACTCAA GCTGATAAGATAAAATTCATAATGTTGCCACTTATGAAGAGTGAGCATGATGATAGCAATATTTTAAGAGATTGTGTTCA GTTAGCAAAATCAATAAAATCTGAAAGAGATGAGGCAATTATATTAAATGGAATAATTGAATCTACAGATAAGTTTATTA GTGAAGAAGAAGCAAGAGAACTTAAGGAGTTGTTAGAAATGACTAAGATTGAGAGATTATATAATGAAGAAAGAGATTTA GCTGTTAAAAATGCAAGAAAAGAAGAGCAATTAAGAATAGCAAAAAGCCTTGCAGGTATATTATCACCTGAGTTAATATC AGAAAAGCTAGGTATAACAATAGAGGAAATTTACGAGCTTCAAAATGCAGAAGGCTAA
Upstream 100 bases:
>100_bases AAACTTTTTAATTTAGGCCTAGATGAAATATATATGTAAATAAAATGTGATATAATAATTGAAAAGAATATATTCTCAAC AAAGTGAGGGTGATAAAAAC
Downstream 100 bases:
>100_bases AGAGAATAGAAAAATTTACTTTTAATAAAAAAGCTTTGGATGAGAATAATTTTTAGAGATGAAAGTTATTTTCCACCAAA GCTTATTTTAGTATTTTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MGRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIFILEDGSILLFGYEDEKNIDE NMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEARNTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQ ADKIKFIMLPLMKSEHDDSNILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG
Sequences:
>Translated_285_residues MGRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIFILEDGSILLFGYEDEKNIDE NMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEARNTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQ ADKIKFIMLPLMKSEHDDSNILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG >Mature_284_residues GRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIFILEDGSILLFGYEDEKNIDEN MFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEARNTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQA DKIKFIMLPLMKSEHDDSNILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDLA VKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32710; Mature: 32579
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIF CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE ILEDGSILLFGYEDEKNIDENMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEAR EEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHH NTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQADKIKFIMLPLMKSEHDDSN HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHCCCCCHH ILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG HHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure GRTNISYGAKDILYKLMGQLYKGKPLEILGVNDMPKIMDRLPRNFFENEVSEGGPNEIF CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE ILEDGSILLFGYEDEKNIDENMFIYLEVAVKVIKRYYKHRGAFPKVRMAIIYNSSVKEAR EEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHH NTLSFGDILICSESIFMNKLTAEKVLKGLKEKVLEDNLTQADKIKFIMLPLMKSEHDDSN HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHCCCCCHH ILRDCVQLAKSIKSERDEAIILNGIIESTDKFISEEEARELKELLEMTKIERLYNEERDL HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH AVKNARKEEQLRIAKSLAGILSPELISEKLGITIEEIYELQNAEG HHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA