| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18310443
Identifier: 18310443
GI number: 18310443
Start: 1718309
End: 1719232
Strand: Reverse
Name: 18310443
Synonym: CPE1461
Alternate gene names: NA
Gene position: 1719232-1718309 (Counterclockwise)
Preceding gene: 18310444
Following gene: 18310442
Centisome position: 56.71
GC content: 32.68
Gene sequence:
>924_bases ATGATAAAGTTTGATAAAAAAAAGAAGAATAATATTACTATAGTAAATATATATAATTTTATAAGAAAAACTGTTTATCC AAGTGGTGAATTTGTTGAAGATGATTTTCAGACAGTAGTTAGAGAGATTGAGCTAATAAAACAATATGGGTTTCCTGCAA CCTATGCATTAAAACATGATGCTTTAATGGATGAAAGATTTGTAAACCTTATAAAGGAATCCATAGATGAATATGACGAA GTTGGAGCTTGGTTTGAGATAACTGAGGAATTAGCAAAGAAGGCAGGTGTTAAATGGAAGGGGGAAACTCCTATTGATGA CCATGTTCATAGGGGATATTCACTAGGATACAGCCCAGAGGATAGATTTAAAATGGCTGATGTTTACATGGATGATTTTA AGTGTATATTTGGATACTATCCTAAGACAGTTGGTTCTTGGGTTATAGATATAAGAACTCTAACTTATTTAAAGGAGAAG TATGGAGTAATAGGAGGGGCTATTTGTAGAGATCAAATTGGAACTGATGGATTTACTCTTTGGGGAGGATATTTTAATCA AGCCTATTATCCAAGTAAGTTAAATGAATATATTCCGGCTCAAAGGGAAGAAATGCAATTGGATTTACCTTTATTTAGGC TTTTAGGACCAGATCCAATTTATAATTTTGAAGAGGGATTACGAGAAGAGTTAAAAGGAGTTCATACTTTAGAGCCAGCA TGGATAATTGGACAAAATAAAGAATGGGTTCATTGGTTTTTTGAGTGTTTAAATGAAGAGGAGACCTTAGGATTTTCTTA CGCTCAGGTAGGACAGGAAAATACATTTTTATGGAATACCATGTATAAGGGATATGAAGTTCAAATAGAACATATATTCA ATTTAGAAAAGGAGAAGAAGCTTAGAGTTGAAACCTTTAGCTGA
Upstream 100 bases:
>100_bases CAAAAAAGAAAATATAAAGAAAATCTTAATAAAAACTAAAATTTTTTCATTGTTTAAAGTATTTAGATTACTTAAAATGG GTTAAAAAGGAGGGGTTTTT
Downstream 100 bases:
>100_bases AAGTGCCCTTTGGGTATAAGAAGAAATATAGGCTAACTCCGCCTACTACCTTTGGGGCTAAAAAGGATTGGACACTTATA ATATGAAAACTTTATGGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MIKFDKKKKNNITIVNIYNFIRKTVYPSGEFVEDDFQTVVREIELIKQYGFPATYALKHDALMDERFVNLIKESIDEYDE VGAWFEITEELAKKAGVKWKGETPIDDHVHRGYSLGYSPEDRFKMADVYMDDFKCIFGYYPKTVGSWVIDIRTLTYLKEK YGVIGGAICRDQIGTDGFTLWGGYFNQAYYPSKLNEYIPAQREEMQLDLPLFRLLGPDPIYNFEEGLREELKGVHTLEPA WIIGQNKEWVHWFFECLNEEETLGFSYAQVGQENTFLWNTMYKGYEVQIEHIFNLEKEKKLRVETFS
Sequences:
>Translated_307_residues MIKFDKKKKNNITIVNIYNFIRKTVYPSGEFVEDDFQTVVREIELIKQYGFPATYALKHDALMDERFVNLIKESIDEYDE VGAWFEITEELAKKAGVKWKGETPIDDHVHRGYSLGYSPEDRFKMADVYMDDFKCIFGYYPKTVGSWVIDIRTLTYLKEK YGVIGGAICRDQIGTDGFTLWGGYFNQAYYPSKLNEYIPAQREEMQLDLPLFRLLGPDPIYNFEEGLREELKGVHTLEPA WIIGQNKEWVHWFFECLNEEETLGFSYAQVGQENTFLWNTMYKGYEVQIEHIFNLEKEKKLRVETFS >Mature_307_residues MIKFDKKKKNNITIVNIYNFIRKTVYPSGEFVEDDFQTVVREIELIKQYGFPATYALKHDALMDERFVNLIKESIDEYDE VGAWFEITEELAKKAGVKWKGETPIDDHVHRGYSLGYSPEDRFKMADVYMDDFKCIFGYYPKTVGSWVIDIRTLTYLKEK YGVIGGAICRDQIGTDGFTLWGGYFNQAYYPSKLNEYIPAQREEMQLDLPLFRLLGPDPIYNFEEGLREELKGVHTLEPA WIIGQNKEWVHWFFECLNEEETLGFSYAQVGQENTFLWNTMYKGYEVQIEHIFNLEKEKKLRVETFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36191; Mature: 36191
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKFDKKKKNNITIVNIYNFIRKTVYPSGEFVEDDFQTVVREIELIKQYGFPATYALKHD CCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHH ALMDERFVNLIKESIDEYDEVGAWFEITEELAKKAGVKWKGETPIDDHVHRGYSLGYSPE HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCC DRFKMADVYMDDFKCIFGYYPKTVGSWVIDIRTLTYLKEKYGVIGGAICRDQIGTDGFTL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEE WGGYFNQAYYPSKLNEYIPAQREEMQLDLPLFRLLGPDPIYNFEEGLREELKGVHTLEPA ECHHHCCCCCCHHHHHHCCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCE WIIGQNKEWVHWFFECLNEEETLGFSYAQVGQENTFLWNTMYKGYEVQIEHIFNLEKEKK EEEECCHHHHHHHHHHHCCCHHCCCHHHHHCCCCCEEEEECCCCEEEEEHHHHCCCHHCC LRVETFS CEEECCC >Mature Secondary Structure MIKFDKKKKNNITIVNIYNFIRKTVYPSGEFVEDDFQTVVREIELIKQYGFPATYALKHD CCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHH ALMDERFVNLIKESIDEYDEVGAWFEITEELAKKAGVKWKGETPIDDHVHRGYSLGYSPE HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCC DRFKMADVYMDDFKCIFGYYPKTVGSWVIDIRTLTYLKEKYGVIGGAICRDQIGTDGFTL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEE WGGYFNQAYYPSKLNEYIPAQREEMQLDLPLFRLLGPDPIYNFEEGLREELKGVHTLEPA ECHHHCCCCCCHHHHHHCCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCE WIIGQNKEWVHWFFECLNEEETLGFSYAQVGQENTFLWNTMYKGYEVQIEHIFNLEKEKK EEEECCHHHHHHHHHHHCCCHHCCCHHHHHCCCCCEEEEECCCCEEEEEHHHHCCCHHCC LRVETFS CEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA