| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is gluP [H]
Identifier: 18310434
GI number: 18310434
Start: 1709642
End: 1710670
Strand: Reverse
Name: gluP [H]
Synonym: CPE1452
Alternate gene names: 18310434
Gene position: 1710670-1709642 (Counterclockwise)
Preceding gene: 18310435
Following gene: 18310433
Centisome position: 56.43
GC content: 28.18
Gene sequence:
>1029_bases ATGAGTAAATTTGAGCAAGATTATTTCAACTTACTTATAAATAATTATGGTTTTTATGTAGAAGACTTAAAAGGAGAACA GGATAAAGAACTATGGATAGCTTTAAAGACAGTTAAAGATGATGGAAAATATGCAGTTATAATATCTAAGTCTTATGAAG AGGAAGAAAATTTAAAAATTGCAGAAGATTATTTAAAAAGCTTAGGTAAGTCATATTCTCTTCATAATATAATTCTTTAT AAAAGCTATGATAGGGATGAAAAAAAGGATGAAGACTTTTCTATAGATGAGAATTGTCATAGAGTAATTGTTGATGTTCA GAAAAGAGAAGTTTTAAAAAGTGATAGGAGCTCTGAGCCTCTAGCAAAAATATTAGAATTTTTATTAAAAAAGAAAGAAG AACCAAAAGTTCCTTGGTATAAAAGATTAAGATGTGGAAAAGTTACAGGAATATTGATTGGTTTAAATATTTTAGCTTTT CTAGTTTGTCTTATTGTAGCTACTGCTTTAGGTGCTGGATTCTTCAGAAATATAGTAGAGATGAATCCACAAATTCTATA TTGGATGGGTGCTAAGCATAATAATGCAATAATATTCCATGGAGAATATTATAGATTAGTAACTTCTATGTTTTTGCATG GTGGAATAGTACATCTTTTATTTAATATGTATGCTCTATATATATTAGGAGATTTCATAGAAAGGATTTATGGAGCGAAA AAATATTTAGCTATCTATTTTGTTTCAGGAATAGTAGCAAGTATATTTAGCTTATACTTTTCACCAGTTATGGGAGTTGG CGCTTCAGGAGCTATATTTGGACTTTTAGGGGCAGCTTTAGTTTTTGCTTATAATGAAAAAGATAGAATTGGTAAAGCCT TAGTAACTAATATAATAGTTATTATATTGCTTAATGTATTTATCGGTCTATCAATGTCTAATATAGATATATCTGCTCGT TTTGGCGGATTCATAGCAGGAGCTATTTTAGGACTTTTCTTCCATAATTATAAAATAATAAGAAAATAA
Upstream 100 bases:
>100_bases TAGATATGACAACATCTAAGCCTCTTAAAGATACCTTAGATAGATTTAATGAGCTTTTAGATATGTTGGAAGAAATTATT TAGAAGATTGAGGAGAGGCA
Downstream 100 bases:
>100_bases AAAAATTCCTCTGTTTTAAATAAGGCAGAGGAGTTTTTTTACCTTCAAAATTAAGAATAAATACTATATACTAAAAGATG GATAATTATTAAATAATAAG
Product: rhomboid family protein
Products: NA
Alternate protein names: Intramembrane serine protease [H]
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSKFEQDYFNLLINNYGFYVEDLKGEQDKELWIALKTVKDDGKYAVIISKSYEEEENLKIAEDYLKSLGKSYSLHNIILY KSYDRDEKKDEDFSIDENCHRVIVDVQKREVLKSDRSSEPLAKILEFLLKKKEEPKVPWYKRLRCGKVTGILIGLNILAF LVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAK KYLAIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIGLSMSNIDISAR FGGFIAGAILGLFFHNYKIIRK
Sequences:
>Translated_342_residues MSKFEQDYFNLLINNYGFYVEDLKGEQDKELWIALKTVKDDGKYAVIISKSYEEEENLKIAEDYLKSLGKSYSLHNIILY KSYDRDEKKDEDFSIDENCHRVIVDVQKREVLKSDRSSEPLAKILEFLLKKKEEPKVPWYKRLRCGKVTGILIGLNILAF LVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAK KYLAIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIGLSMSNIDISAR FGGFIAGAILGLFFHNYKIIRK >Mature_341_residues SKFEQDYFNLLINNYGFYVEDLKGEQDKELWIALKTVKDDGKYAVIISKSYEEEENLKIAEDYLKSLGKSYSLHNIILYK SYDRDEKKDEDFSIDENCHRVIVDVQKREVLKSDRSSEPLAKILEFLLKKKEEPKVPWYKRLRCGKVTGILIGLNILAFL VCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKK YLAIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILLNVFIGLSMSNIDISARF GGFIAGAILGLFFHNYKIIRK
Specific function: Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter [H]
COG id: COG0705
COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002610 - InterPro: IPR022764 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF01694 Rhomboid; PF00515 TPR_1 [H]
EC number: =3.4.21.105 [H]
Molecular weight: Translated: 38941; Mature: 38810
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKFEQDYFNLLINNYGFYVEDLKGEQDKELWIALKTVKDDGKYAVIISKSYEEEENLKI CCCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCH AEDYLKSLGKSYSLHNIILYKSYDRDEKKDEDFSIDENCHRVIVDVQKREVLKSDRSSEP HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH LAKILEFLLKKKEEPKVPWYKRLRCGKVTGILIGLNILAFLVCLIVATALGAGFFRNIVE HHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MNPQILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAK CCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHH KYLAIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IILLNVFIGLSMSNIDISARFGGFIAGAILGLFFHNYKIIRK HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHCCC >Mature Secondary Structure SKFEQDYFNLLINNYGFYVEDLKGEQDKELWIALKTVKDDGKYAVIISKSYEEEENLKI CCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCH AEDYLKSLGKSYSLHNIILYKSYDRDEKKDEDFSIDENCHRVIVDVQKREVLKSDRSSEP HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH LAKILEFLLKKKEEPKVPWYKRLRCGKVTGILIGLNILAFLVCLIVATALGAGFFRNIVE HHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MNPQILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAK CCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHH KYLAIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IILLNVFIGLSMSNIDISARFGGFIAGAILGLFFHNYKIIRK HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]