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The map label for this gene is 18310432

Identifier: 18310432

GI number: 18310432

Start: 1707913

End: 1708542

Strand: Reverse

Name: 18310432

Synonym: CPE1450

Alternate gene names: NA

Gene position: 1708542-1707913 (Counterclockwise)

Preceding gene: 18310433

Following gene: 18310431

Centisome position: 56.36

GC content: 29.84

Gene sequence:

>630_bases
ATGGCTAAAAAATATTATGCTATAGCAAAAGGAAAATCAGGAATTCCTAAGATTGTTGAGACTTGGACAGAATGCCAAAA
AGAAGTAATAGGATGTAAAGGTGCTAAGTACAAAAGTTTCACTTCAAAGGAAGAGGCAGAAAAGTTTATTTCTATTCATG
AAAATGGAGGAAGCTTTGAGGAAGTTAAAGGAAATGAAGAGGTTAAGGATGATTTAATTTATATTTACGTAGATGGTAGC
TTTATGGTTTCTAAAGAAAATTATTCTTATGGCTTCTTAGTAGTAAAAAATGATGAAATATTATATGAAGATAATGGTGT
TGGATATGATAAAGAAGCAATAGCTCTAAGAAACGTATCAGGAGAAGTTGAAGGGGCTATGAAGGCAATTGAATATGCCA
TAGAAAATGGATATAAGGATATAGTTCTTTGTTATGATTATCAAGGAATTGAGAGCTGGGCTTTAGGAACTTGGAAAAGA
AATAATAGAATAACTCAAAATTATAATGAGTTTATGCAAGAAAAATTTAAACTCATAAAGGTTAGATTTAAAAAAATAAA
AGGACACAGCGGAAATAAATTTAATGATAGAGCAGATATACTTGCCAAAAAAGCATTAGAAAGTCTTTAA

Upstream 100 bases:

>100_bases
AAAGACTGTAGAATTCTTTAGTGGATTTACAGGTGCTAATAATTTAGATAATATATATGAAGTCATAGATGTAATAACTA
ATTAAAAAAGGAGTAAAATA

Downstream 100 bases:

>100_bases
TGCTATGAATTACCTCTAATAAAAATGTTTTAATTAGACAAACTAAATATGAAATCATTATTAAAAGAGGTGATTATTAT
GGCAAAAAAATTAATGACTA

Product: ribonuclease H-related protein

Products: NA

Alternate protein names: Ribonuclease HI; Ribonuclease H-Related Protein; RNAse H Family Protein; Ribonuclease; Ribonuclease H1-Like; RNAse H

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAKKYYAIAKGKSGIPKIVETWTECQKEVIGCKGAKYKSFTSKEEAEKFISIHENGGSFEEVKGNEEVKDDLIYIYVDGS
FMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMKAIEYAIENGYKDIVLCYDYQGIESWALGTWKR
NNRITQNYNEFMQEKFKLIKVRFKKIKGHSGNKFNDRADILAKKALESL

Sequences:

>Translated_209_residues
MAKKYYAIAKGKSGIPKIVETWTECQKEVIGCKGAKYKSFTSKEEAEKFISIHENGGSFEEVKGNEEVKDDLIYIYVDGS
FMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMKAIEYAIENGYKDIVLCYDYQGIESWALGTWKR
NNRITQNYNEFMQEKFKLIKVRFKKIKGHSGNKFNDRADILAKKALESL
>Mature_208_residues
AKKYYAIAKGKSGIPKIVETWTECQKEVIGCKGAKYKSFTSKEEAEKFISIHENGGSFEEVKGNEEVKDDLIYIYVDGSF
MVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVSGEVEGAMKAIEYAIENGYKDIVLCYDYQGIESWALGTWKRN
NRITQNYNEFMQEKFKLIKVRFKKIKGHSGNKFNDRADILAKKALESL

Specific function: Unknown

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI115532542, Length=248, Percent_Identity=29.4354838709677, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23907; Mature: 23776

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKYYAIAKGKSGIPKIVETWTECQKEVIGCKGAKYKSFTSKEEAEKFISIHENGGSFE
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEECCCCCHH
EVKGNEEVKDDLIYIYVDGSFMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVS
HCCCCCCCCCCEEEEEECCEEEEEECCCCEEEEEEECCEEEEECCCCCCCHHHEEEECCC
GEVEGAMKAIEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIK
CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
VRFKKIKGHSGNKFNDRADILAKKALESL
HHHHHHCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKYYAIAKGKSGIPKIVETWTECQKEVIGCKGAKYKSFTSKEEAEKFISIHENGGSFE
CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEECCCCCHH
EVKGNEEVKDDLIYIYVDGSFMVSKENYSYGFLVVKNDEILYEDNGVGYDKEAIALRNVS
HCCCCCCCCCCEEEEEECCEEEEEECCCCEEEEEEECCEEEEECCCCCCCHHHEEEECCC
GEVEGAMKAIEYAIENGYKDIVLCYDYQGIESWALGTWKRNNRITQNYNEFMQEKFKLIK
CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
VRFKKIKGHSGNKFNDRADILAKKALESL
HHHHHHCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA