Click here to switch to the map view.

The map label for this gene is ydeC [H]

Identifier: 18310427

GI number: 18310427

Start: 1702268

End: 1704328

Strand: Direct

Name: ydeC [H]

Synonym: CPE1445

Alternate gene names: 18310427

Gene position: 1702268-1704328 (Clockwise)

Preceding gene: 18310412

Following gene: 18310437

Centisome position: 56.15

GC content: 27.22

Gene sequence:

>2061_bases
GTGAGAAAAGAATATGTTAATTTCCCTTCAGACATACCTGTAACCATATCTTATGTAAACATAAAAAACTACCCCTTGCA
TTGGCATGATGCAATAGAAATACTTTATGTTCTTAAGGGCAGCATAAAAGTAGATATAGATACTGACAGTTATGAAATAC
AAGAAGATGAAATTGAAATAGTAAACACAGAACAAACTCATAGAATTTATTCTAATAAGGATAACAGAGTTTTAATATTT
AAAATAGATCCACACTTTTTCGAAAAATATTATAGCGATATAGAAAATATGTTTTTCTATACTAACACCTCTGATGAAGG
TGCTCAAAGTGATGAATCTTACGATAAACTTAGAGTATTTTTATCCATTATATTATGTGAAGAAGCTCAAAAAGTAGATG
ATTATGATAAATATATAGAAAAATCCCTAGTAGAGCTTTTATTTCACCTTTTAAATAATTTCCACTATCTTTTATATGAT
AATGATGAAATTCATGAGAATAATATGTTACTAGAAAGGTACCATAGAATTTCTAAGTATATATATAATAACTACAATAA
GAATATAACCTTAAAGGATATTGCTAATACTGAGTTTCTTAGTACTCATTATCTTTCCCATGAAATAAAATATGCAACAG
GACTAAGTTTTACAGACCTTCTAAACTTAACTAGAGTTGAAGAATCAGTAAAACTTCTTTTAGATACTGATAAGTCCTTA
TCTGAAATATCTTATGAAATAGGCTTTTCTCATACTCGTTATTTTAATAAACATTTTAAGGCCTATTACAATTGCACTCC
TCTTCAATTTAGAAAAAAACATAAAATAAGTGAAGAGGAATATAATAAACAAAAAGAAATAACTTACTATCCCTTAGCTG
ATAGTCTTGAGGAACTATCTTATTACTTAGATGATTATCCAAGATTTAATTATGAAGATAAGATTCATAAGCTTACTTTT
AATATGAATACTGAAGGCACTGAATTTAATAAATACTTTAAAGAAGTTCTTAATGTAGGAGATGCCTTTGACTTATTATT
AGAAGATAACCAAGATATTGTTGAAGATCTTCAAGATCATATAGGGTATAACTATATAAGACTTCTACATGTATTTTCAT
CAGATATGGGCATATTCCCTGGTTCAAAATTCTTTAACTGGACTAGAACCTTTGATATTTTTGAATATATATCTTCATTA
GATTTAATCCCTTTAATAGTCCTAGATGATTCTGGATATTCTAAGGATAATTTCTTAGATGTTATAAAATCCTTTATAGA
CTTTTTTAGCGAGGTAGAAAGTTTTGAATTAACAGATTTAAAATTCCAATTTACCTCTACATTTAATGAGGATCTAAAGA
ATTCTTTAATTGAATTGTTTGAATCTAAGGATTTAAATTTAGTAAATGAACTTTATACTCCAAACAATAAAATAGATTTA
ATATATGACACAGCTTATATGCTTCCATTTATAATTCATAATACTGTAAGCTCAGGAAGCAAATTAAACTTTATAAAAGC
CTTTGATGCCTTAGATAGACAAATTGACATTACAAATGAAGTTTTCTTTGGCTATCCAGCAATGGTAAATGATAAAGGAA
TTAAAAAACCCTCTTATTATGCTTACTATTTTTTAAGCAAACTAGGAGACACACTTCTTTATAAGGGAGATGGATATATA
CTAACTAAGTCAGAGGATGAATATCAACTTCTTGTATATACCTATAATGATGAAATTGATTCCCTTATAGATTTTAAAAA
CTTTACTAAGTTAAGAGGGGTTAAAGACTTGGTAGATAAAAAACTTTCCTTAAACTTACTTGATTTAGATAGCGATGTTA
GAATAACTAAATACACCATAGGGGAGAACTTTGGCTCTTCATTTAATTACTGGCTTTCCATGGGAAAACCTAAAAGATTA
AGAAAAGCAGAAAAGGATATATTATTCCAAGCTTCCTATCCTAAAATAGAATTTAAGTACGCCAAAAAAAATACTATTTT
AAATATACAAACAACTCTTCAAGGATATTGTGCAGAACTATTTATACTAAAAAAAGTTTAA

Upstream 100 bases:

>100_bases
TTTTTAAGAATTAATTTTATTAAATAAATTCAACTAAATTTTATATAACAAATACTGTTTAGAATTTAGTTTAATCCTAT
TATATAAAGGAGTTTTTTAA

Downstream 100 bases:

>100_bases
TATTGTATAATAACCATGAAAAAAGAGTACTTTTTTGCCTTTTTCAAATATTTTCCTTAAAAACTTTCCTTACATTTGTA
CATTTTTTTAAACATACATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MRKEYVNFPSDIPVTISYVNIKNYPLHWHDAIEILYVLKGSIKVDIDTDSYEIQEDEIEIVNTEQTHRIYSNKDNRVLIF
KIDPHFFEKYYSDIENMFFYTNTSDEGAQSDESYDKLRVFLSIILCEEAQKVDDYDKYIEKSLVELLFHLLNNFHYLLYD
NDEIHENNMLLERYHRISKYIYNNYNKNITLKDIANTEFLSTHYLSHEIKYATGLSFTDLLNLTRVEESVKLLLDTDKSL
SEISYEIGFSHTRYFNKHFKAYYNCTPLQFRKKHKISEEEYNKQKEITYYPLADSLEELSYYLDDYPRFNYEDKIHKLTF
NMNTEGTEFNKYFKEVLNVGDAFDLLLEDNQDIVEDLQDHIGYNYIRLLHVFSSDMGIFPGSKFFNWTRTFDIFEYISSL
DLIPLIVLDDSGYSKDNFLDVIKSFIDFFSEVESFELTDLKFQFTSTFNEDLKNSLIELFESKDLNLVNELYTPNNKIDL
IYDTAYMLPFIIHNTVSSGSKLNFIKAFDALDRQIDITNEVFFGYPAMVNDKGIKKPSYYAYYFLSKLGDTLLYKGDGYI
LTKSEDEYQLLVYTYNDEIDSLIDFKNFTKLRGVKDLVDKKLSLNLLDLDSDVRITKYTIGENFGSSFNYWLSMGKPKRL
RKAEKDILFQASYPKIEFKYAKKNTILNIQTTLQGYCAELFILKKV

Sequences:

>Translated_686_residues
MRKEYVNFPSDIPVTISYVNIKNYPLHWHDAIEILYVLKGSIKVDIDTDSYEIQEDEIEIVNTEQTHRIYSNKDNRVLIF
KIDPHFFEKYYSDIENMFFYTNTSDEGAQSDESYDKLRVFLSIILCEEAQKVDDYDKYIEKSLVELLFHLLNNFHYLLYD
NDEIHENNMLLERYHRISKYIYNNYNKNITLKDIANTEFLSTHYLSHEIKYATGLSFTDLLNLTRVEESVKLLLDTDKSL
SEISYEIGFSHTRYFNKHFKAYYNCTPLQFRKKHKISEEEYNKQKEITYYPLADSLEELSYYLDDYPRFNYEDKIHKLTF
NMNTEGTEFNKYFKEVLNVGDAFDLLLEDNQDIVEDLQDHIGYNYIRLLHVFSSDMGIFPGSKFFNWTRTFDIFEYISSL
DLIPLIVLDDSGYSKDNFLDVIKSFIDFFSEVESFELTDLKFQFTSTFNEDLKNSLIELFESKDLNLVNELYTPNNKIDL
IYDTAYMLPFIIHNTVSSGSKLNFIKAFDALDRQIDITNEVFFGYPAMVNDKGIKKPSYYAYYFLSKLGDTLLYKGDGYI
LTKSEDEYQLLVYTYNDEIDSLIDFKNFTKLRGVKDLVDKKLSLNLLDLDSDVRITKYTIGENFGSSFNYWLSMGKPKRL
RKAEKDILFQASYPKIEFKYAKKNTILNIQTTLQGYCAELFILKKV
>Mature_686_residues
MRKEYVNFPSDIPVTISYVNIKNYPLHWHDAIEILYVLKGSIKVDIDTDSYEIQEDEIEIVNTEQTHRIYSNKDNRVLIF
KIDPHFFEKYYSDIENMFFYTNTSDEGAQSDESYDKLRVFLSIILCEEAQKVDDYDKYIEKSLVELLFHLLNNFHYLLYD
NDEIHENNMLLERYHRISKYIYNNYNKNITLKDIANTEFLSTHYLSHEIKYATGLSFTDLLNLTRVEESVKLLLDTDKSL
SEISYEIGFSHTRYFNKHFKAYYNCTPLQFRKKHKISEEEYNKQKEITYYPLADSLEELSYYLDDYPRFNYEDKIHKLTF
NMNTEGTEFNKYFKEVLNVGDAFDLLLEDNQDIVEDLQDHIGYNYIRLLHVFSSDMGIFPGSKFFNWTRTFDIFEYISSL
DLIPLIVLDDSGYSKDNFLDVIKSFIDFFSEVESFELTDLKFQFTSTFNEDLKNSLIELFESKDLNLVNELYTPNNKIDL
IYDTAYMLPFIIHNTVSSGSKLNFIKAFDALDRQIDITNEVFFGYPAMVNDKGIKKPSYYAYYFLSKLGDTLLYKGDGYI
LTKSEDEYQLLVYTYNDEIDSLIDFKNFTKLRGVKDLVDKKLSLNLLDLDSDVRITKYTIGENFGSSFNYWLSMGKPKRL
RKAEKDILFQASYPKIEFKYAKKNTILNIQTTLQGYCAELFILKKV

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 81288; Mature: 81288

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEYVNFPSDIPVTISYVNIKNYPLHWHDAIEILYVLKGSIKVDIDTDSYEIQEDEIEI
CCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHEECCCEEEEECCCCEEEECCCEEE
VNTEQTHRIYSNKDNRVLIFKIDPHFFEKYYSDIENMFFYTNTSDEGAQSDESYDKLRVF
ECCCHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHH
LSIILCEEAQKVDDYDKYIEKSLVELLFHLLNNFHYLLYDNDEIHENNMLLERYHRISKY
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHH
IYNNYNKNITLKDIANTEFLSTHYLSHEIKYATGLSFTDLLNLTRVEESVKLLLDTDKSL
HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCH
SEISYEIGFSHTRYFNKHFKAYYNCTPLQFRKKHKISEEEYNKQKEITYYPLADSLEELS
HHHHHHHCCCHHHHHHHHHHHEECCCCHHHHHHCCCCHHHHCCCCCEEEECCHHHHHHHH
YYLDDYPRFNYEDKIHKLTFNMNTEGTEFNKYFKEVLNVGDAFDLLLEDNQDIVEDLQDH
HHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEHEECCCHHHHHHHHHH
IGYNYIRLLHVFSSDMGIFPGSKFFNWTRTFDIFEYISSLDLIPLIVLDDSGYSKDNFLD
HCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
VIKSFIDFFSEVESFELTDLKFQFTSTFNEDLKNSLIELFESKDLNLVNELYTPNNKIDL
HHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEE
IYDTAYMLPFIIHNTVSSGSKLNFIKAFDALDRQIDITNEVFFGYPAMVNDKGIKKPSYY
EEEHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCEECCCCEEECCCCEECCCCCCCCCHH
AYYFLSKLGDTLLYKGDGYILTKSEDEYQLLVYTYNDEIDSLIDFKNFTKLRGVKDLVDK
HHHHHHHHCCEEEEECCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHCC
KLSLNLLDLDSDVRITKYTIGENFGSSFNYWLSMGKPKRLRKAEKDILFQASYPKIEFKY
HHEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHCEEEEECCCCEEEEE
AKKNTILNIQTTLQGYCAELFILKKV
ECCCEEEEEHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MRKEYVNFPSDIPVTISYVNIKNYPLHWHDAIEILYVLKGSIKVDIDTDSYEIQEDEIEI
CCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHEECCCEEEEECCCCEEEECCCEEE
VNTEQTHRIYSNKDNRVLIFKIDPHFFEKYYSDIENMFFYTNTSDEGAQSDESYDKLRVF
ECCCHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHH
LSIILCEEAQKVDDYDKYIEKSLVELLFHLLNNFHYLLYDNDEIHENNMLLERYHRISKY
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHH
IYNNYNKNITLKDIANTEFLSTHYLSHEIKYATGLSFTDLLNLTRVEESVKLLLDTDKSL
HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCH
SEISYEIGFSHTRYFNKHFKAYYNCTPLQFRKKHKISEEEYNKQKEITYYPLADSLEELS
HHHHHHHCCCHHHHHHHHHHHEECCCCHHHHHHCCCCHHHHCCCCCEEEECCHHHHHHHH
YYLDDYPRFNYEDKIHKLTFNMNTEGTEFNKYFKEVLNVGDAFDLLLEDNQDIVEDLQDH
HHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEHEECCCHHHHHHHHHH
IGYNYIRLLHVFSSDMGIFPGSKFFNWTRTFDIFEYISSLDLIPLIVLDDSGYSKDNFLD
HCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
VIKSFIDFFSEVESFELTDLKFQFTSTFNEDLKNSLIELFESKDLNLVNELYTPNNKIDL
HHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEE
IYDTAYMLPFIIHNTVSSGSKLNFIKAFDALDRQIDITNEVFFGYPAMVNDKGIKKPSYY
EEEHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCEECCCCEEECCCCEECCCCCCCCCHH
AYYFLSKLGDTLLYKGDGYILTKSEDEYQLLVYTYNDEIDSLIDFKNFTKLRGVKDLVDK
HHHHHHHHCCEEEEECCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHCC
KLSLNLLDLDSDVRITKYTIGENFGSSFNYWLSMGKPKRLRKAEKDILFQASYPKIEFKY
HHEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHCEEEEECCCCEEEEE
AKKNTILNIQTTLQGYCAELFILKKV
ECCCEEEEEHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]