| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is mngB [H]
Identifier: 18310397
GI number: 18310397
Start: 1667981
End: 1670560
Strand: Reverse
Name: mngB [H]
Synonym: CPE1415
Alternate gene names: 18310397
Gene position: 1670560-1667981 (Counterclockwise)
Preceding gene: 18310398
Following gene: 18310396
Centisome position: 55.11
GC content: 29.84
Gene sequence:
>2580_bases ATGAAAAAAGTACATGTAGTTTCACATAGTCACTGGGATAGAGAATGGTATATACCATTTCAAAAACATAGAGTTAAATT AGTAGATTTTATGGATTCATTAATAGATACCTTAGAGAATAATGAGCATTTTAAATATTTCCATTTAGATGGACAAACTA TAGCTCTAGATGATTATTTAGAAATAAAGCCATATATGTTTCATAGATTAAAGAAACTTATAGAAGAGGGAAGACTTCAT GTAGGACCATGGTATGTTCTTCAAGATGAATATTTAATAAGTGCAGAAGCAAATGTAAGAAATATGCTTTTAGGAATGAG ATTTGCAAAAAGATTTGGAAACCCAGTAAAAATAGGTTATTTCCCAGATTCCTTTGGTAACATATCTCAAGCGCCTCAAA TACTAAGAGGATTTGGAATAGATAATGCAGTATTCGGTAGAGGAATAACTCCAATAGCTTTTGATAACCAAAAGGTTGAA GAAGCAGGAGAAAATGAATATCACTCAGAGGTATTATGGAAATCACCAGATGGATCAGAAGTTTTAGGAATACTTATGGC TAACTGGTATAGTAATGGTAATGAAATTCCAGTATACAAAAAAGAAGCTATTGAATTCTTAAATGATAGAGTTAATAAAG CAGATATGTATGCTACAACAAATCAAGTACTATTAATGAATGGATGTGATCATCAACCAGTTCAAACAAATGTTGGTGAC ATAATAGATAATGTAAAAGAAGATGTTGATTTTGAATTAGTTCATAGTAATTTAGTTCAATATATAGAAGATGTTAAGAA AGAAGTTAAAGATTTAAAAGAAGTTACAGGAGAATTAAATGGTCAATATACAGATGGCTGGTGGACTCTATGTAACACAG CTTCATCAAGACTTTACTTAAAGCAAATGAATAATAAGTCTCAAGTTCTTCTAGAAAGATATGTTGAGCCTTTAGGAGTT ATGGCTTCATTAGAAGGAAAGAAATACGAAAGTGATTTCATACTTCAAGCATGGAAATACTTAATTCAAAACCATCCTCA TGATTCAATCTGTGGATGTAGTATTGATGAAGTTCATCAAGATATGGTAACAAGATTTAAATCTAGTATGCAAATATCAG AGGAAATGATAGCTAGAAGTACTGAGCATATGTTAAATCTAGTAAATGGAACTACTACTGATAGAGAAAGTATTGTTGTA TTTAATACCTTAGGATGGGATAGAAGTGAAGTAGTAGAGGCTACAGTTGATGTAAATAAAGAATCAGGTATAGAAAACTT CAAGGTTGTTACAGAAAATGGAGAGGAAGTTCCATCAGTGGTTGAAGTCTTAGGAGAAACATTTAAATATACTCTTCCAA ATAATAGATTTAGACAACCTGAGTATGTAAATAGATTTAAGGTTAAATTCTTAGCTAATAATATAAAAGCTTTAGGATTA AAATCATTTAAAATAGTTCCATGTGAAAAGAGAGAAGAAAAAGAAGTTTCCAAAGATTTAACTTTTGAAAATAAATTCTT CTCATTAAAGTTCAATGAAAATGGTACATTTGATTTAATTCATAAAGGAACAAATAAAGAGTATAAGAATTTAAATGCCT TTGAAGATTGTGGAGATATAGGAGATGAATACATCTTTAGAGCTCCTGAGAAAGATTTAGTAGTAAATACTTTAGGAAAT AAAGCTTCTATTAATGTATTAAAAGATAATGAAGTAGAAAAAGTAATAGAGGTTAAAAATACTTTAGAAGTACCAGTAAA AGCTATTAAGAAAGAAAGCAGAAGGGTAGAAGAAACAACTGAAATTAAGTTAGTTTCTACTATAATCTTAAGTGAAGTTT CTAAGAGAGTTGATATTAAAGTTGAAATAGAAAATACTGCAAAGGATCATAGAGTAAGAGCATTATTCCCAACTGGAATA GAAGCAAGCACTCATTTTGCAGAGGGACATTTTGATGTTATAGAAAGAGAAACAACTCCATGGGAAGGATGGCAAAATCC ATCTAATTGTCAAAAACAAACAAACTTTGTTGATGTAAATGACGGAAAAGTTGGACTTATGGTTGCTAACATGGGATTAC CTGAATATGAGGTATTAAGAGATGGTGAAAATACTATAGCTTTAACAATATTAAGATCTGTTGGAGAGTTAGGAGATTGG GGAGTATTTAAAACACCAGAGGCTCAATGTTTAGGAAAGAATGTTGCTGAATACTCAATAATAGCTCATGAAGGAGATTA TACTGGAGAAAGAGCTTACGAAGAAGCATATAACTTAAATACTCCAATGTTAGCACTTCAAGGAGATTTCAAAGATGAGG ATTCTTTAGTTTCAATTAAGGGAGAAAATGTAGTTTTATCAGCCTTTAAGAAAGCTGAAGATGGTGATTCTATAATAGTA AGAATATTTAACATTTCTGATAAGGAAGAAAACTTCCAAATAAAAGTTAATAGAGATGTTAAAGAAATAAATGAAGTTAA CTTAAATGAAGAACTTATAGAAAAACTAGAAGTAAAAGAAAATGCTATTAATGGAATTATTTCAAAGAAACAAATAAAAA CTTTTGAAATAGTGCTTTAA
Upstream 100 bases:
>100_bases AAGTCCACTAAACATATAAGATTGAAAATTGAATGAATGCTTTGTAAACGTATATAATCTAGGTATAGGTTAATGAAATT TAGATAAGGAGAGGTTAGTC
Downstream 100 bases:
>100_bases TAAGGAATTAATAAGAGGATATATCAAAAGATATATCCTCTTATTAATTTCATGTGTCTTTTATTAGAGAACAGTTGTAT TTTAAAATATAGGGTGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MKKVHVVSHSHWDREWYIPFQKHRVKLVDFMDSLIDTLENNEHFKYFHLDGQTIALDDYLEIKPYMFHRLKKLIEEGRLH VGPWYVLQDEYLISAEANVRNMLLGMRFAKRFGNPVKIGYFPDSFGNISQAPQILRGFGIDNAVFGRGITPIAFDNQKVE EAGENEYHSEVLWKSPDGSEVLGILMANWYSNGNEIPVYKKEAIEFLNDRVNKADMYATTNQVLLMNGCDHQPVQTNVGD IIDNVKEDVDFELVHSNLVQYIEDVKKEVKDLKEVTGELNGQYTDGWWTLCNTASSRLYLKQMNNKSQVLLERYVEPLGV MASLEGKKYESDFILQAWKYLIQNHPHDSICGCSIDEVHQDMVTRFKSSMQISEEMIARSTEHMLNLVNGTTTDRESIVV FNTLGWDRSEVVEATVDVNKESGIENFKVVTENGEEVPSVVEVLGETFKYTLPNNRFRQPEYVNRFKVKFLANNIKALGL KSFKIVPCEKREEKEVSKDLTFENKFFSLKFNENGTFDLIHKGTNKEYKNLNAFEDCGDIGDEYIFRAPEKDLVVNTLGN KASINVLKDNEVEKVIEVKNTLEVPVKAIKKESRRVEETTEIKLVSTIILSEVSKRVDIKVEIENTAKDHRVRALFPTGI EASTHFAEGHFDVIERETTPWEGWQNPSNCQKQTNFVDVNDGKVGLMVANMGLPEYEVLRDGENTIALTILRSVGELGDW GVFKTPEAQCLGKNVAEYSIIAHEGDYTGERAYEEAYNLNTPMLALQGDFKDEDSLVSIKGENVVLSAFKKAEDGDSIIV RIFNISDKEENFQIKVNRDVKEINEVNLNEELIEKLEVKENAINGIISKKQIKTFEIVL
Sequences:
>Translated_859_residues MKKVHVVSHSHWDREWYIPFQKHRVKLVDFMDSLIDTLENNEHFKYFHLDGQTIALDDYLEIKPYMFHRLKKLIEEGRLH VGPWYVLQDEYLISAEANVRNMLLGMRFAKRFGNPVKIGYFPDSFGNISQAPQILRGFGIDNAVFGRGITPIAFDNQKVE EAGENEYHSEVLWKSPDGSEVLGILMANWYSNGNEIPVYKKEAIEFLNDRVNKADMYATTNQVLLMNGCDHQPVQTNVGD IIDNVKEDVDFELVHSNLVQYIEDVKKEVKDLKEVTGELNGQYTDGWWTLCNTASSRLYLKQMNNKSQVLLERYVEPLGV MASLEGKKYESDFILQAWKYLIQNHPHDSICGCSIDEVHQDMVTRFKSSMQISEEMIARSTEHMLNLVNGTTTDRESIVV FNTLGWDRSEVVEATVDVNKESGIENFKVVTENGEEVPSVVEVLGETFKYTLPNNRFRQPEYVNRFKVKFLANNIKALGL KSFKIVPCEKREEKEVSKDLTFENKFFSLKFNENGTFDLIHKGTNKEYKNLNAFEDCGDIGDEYIFRAPEKDLVVNTLGN KASINVLKDNEVEKVIEVKNTLEVPVKAIKKESRRVEETTEIKLVSTIILSEVSKRVDIKVEIENTAKDHRVRALFPTGI EASTHFAEGHFDVIERETTPWEGWQNPSNCQKQTNFVDVNDGKVGLMVANMGLPEYEVLRDGENTIALTILRSVGELGDW GVFKTPEAQCLGKNVAEYSIIAHEGDYTGERAYEEAYNLNTPMLALQGDFKDEDSLVSIKGENVVLSAFKKAEDGDSIIV RIFNISDKEENFQIKVNRDVKEINEVNLNEELIEKLEVKENAINGIISKKQIKTFEIVL >Mature_859_residues MKKVHVVSHSHWDREWYIPFQKHRVKLVDFMDSLIDTLENNEHFKYFHLDGQTIALDDYLEIKPYMFHRLKKLIEEGRLH VGPWYVLQDEYLISAEANVRNMLLGMRFAKRFGNPVKIGYFPDSFGNISQAPQILRGFGIDNAVFGRGITPIAFDNQKVE EAGENEYHSEVLWKSPDGSEVLGILMANWYSNGNEIPVYKKEAIEFLNDRVNKADMYATTNQVLLMNGCDHQPVQTNVGD IIDNVKEDVDFELVHSNLVQYIEDVKKEVKDLKEVTGELNGQYTDGWWTLCNTASSRLYLKQMNNKSQVLLERYVEPLGV MASLEGKKYESDFILQAWKYLIQNHPHDSICGCSIDEVHQDMVTRFKSSMQISEEMIARSTEHMLNLVNGTTTDRESIVV FNTLGWDRSEVVEATVDVNKESGIENFKVVTENGEEVPSVVEVLGETFKYTLPNNRFRQPEYVNRFKVKFLANNIKALGL KSFKIVPCEKREEKEVSKDLTFENKFFSLKFNENGTFDLIHKGTNKEYKNLNAFEDCGDIGDEYIFRAPEKDLVVNTLGN KASINVLKDNEVEKVIEVKNTLEVPVKAIKKESRRVEETTEIKLVSTIILSEVSKRVDIKVEIENTAKDHRVRALFPTGI EASTHFAEGHFDVIERETTPWEGWQNPSNCQKQTNFVDVNDGKVGLMVANMGLPEYEVLRDGENTIALTILRSVGELGDW GVFKTPEAQCLGKNVAEYSIIAHEGDYTGERAYEEAYNLNTPMLALQGDFKDEDSLVSIKGENVVLSAFKKAEDGDSIIV RIFNISDKEENFQIKVNRDVKEINEVNLNEELIEKLEVKENAINGIISKKQIKTFEIVL
Specific function: May hydrolyze mannosyl-D-glycerate to mannose-6- phosphate and glycerate [H]
COG id: COG0383
COG function: function code G; Alpha-mannosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 38 family [H]
Homologues:
Organism=Escherichia coli, GI1786952, Length=897, Percent_Identity=27.536231884058, Blast_Score=371, Evalue=1e-104,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR011330 - InterPro: IPR011682 - InterPro: IPR015341 - InterPro: IPR000602 [H]
Pfam domain/function: PF09261 Alpha-mann_mid; PF01074 Glyco_hydro_38; PF07748 Glyco_hydro_38C [H]
EC number: NA
Molecular weight: Translated: 98297; Mature: 98297
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVHVVSHSHWDREWYIPFQKHRVKLVDFMDSLIDTLENNEHFKYFHLDGQTIALDDYL CCEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCC EIKPYMFHRLKKLIEEGRLHVGPWYVLQDEYLISAEANVRNMLLGMRFAKRFGNPVKIGY CCCHHHHHHHHHHHHCCCEEECCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE FPDSFGNISQAPQILRGFGIDNAVFGRGITPIAFDNQKVEEAGENEYHSEVLWKSPDGSE CCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEECCCHHHHCCCCCHHCCEEEECCCCHH VLGILMANWYSNGNEIPVYKKEAIEFLNDRVNKADMYATTNQVLLMNGCDHQPVQTNVGD HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHEEEECCCEEEEECCCCCCCCCCHHH IIDNVKEDVDFELVHSNLVQYIEDVKKEVKDLKEVTGELNGQYTDGWWTLCNTASSRLYL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHEECCCCCEEEE KQMNNKSQVLLERYVEPLGVMASLEGKKYESDFILQAWKYLIQNHPHDSICGCSIDEVHQ ECCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH DMVTRFKSSMQISEEMIARSTEHMLNLVNGTTTDRESIVVFNTLGWDRSEVVEATVDVNK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHEEHHEECCC ESGIENFKVVTENGEEVPSVVEVLGETFKYTLPNNRFRQPEYVNRFKVKFLANNIKALGL CCCCCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHCCHHCCCC KSFKIVPCEKREEKEVSKDLTFENKFFSLKFNENGTFDLIHKGTNKEYKNLNAFEDCGDI CCEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCHHCCCCHHHHHCC GDEYIFRAPEKDLVVNTLGNKASINVLKDNEVEKVIEVKNTLEVPVKAIKKESRRVEETT CCHHEEECCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIKLVSTIILSEVSKRVDIKVEIENTAKDHRVRALFPTGIEASTHFAEGHFDVIERETTP HHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEEECCCCCCCCEECCCCHHHHCCCCCC WEGWQNPSNCQKQTNFVDVNDGKVGLMVANMGLPEYEVLRDGENTIALTILRSVGELGDW CCCCCCCHHHHHCCCEEEECCCEEEEEEEECCCCCHHHHCCCCCEEEHHHHHHHCCCCCC GVFKTPEAQCLGKNVAEYSIIAHEGDYTGERAYEEAYNLNTPMLALQGDFKDEDSLVSIK CCCCCCCHHHHCCCCHHEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEE GENVVLSAFKKAEDGDSIIVRIFNISDKEENFQIKVNRDVKEINEVNLNEELIEKLEVKE CCCEEEEEHHCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHH NAINGIISKKQIKTFEIVL HHHHHCCCCCCCCEEEEEC >Mature Secondary Structure MKKVHVVSHSHWDREWYIPFQKHRVKLVDFMDSLIDTLENNEHFKYFHLDGQTIALDDYL CCEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCC EIKPYMFHRLKKLIEEGRLHVGPWYVLQDEYLISAEANVRNMLLGMRFAKRFGNPVKIGY CCCHHHHHHHHHHHHCCCEEECCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE FPDSFGNISQAPQILRGFGIDNAVFGRGITPIAFDNQKVEEAGENEYHSEVLWKSPDGSE CCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEECCCHHHHCCCCCHHCCEEEECCCCHH VLGILMANWYSNGNEIPVYKKEAIEFLNDRVNKADMYATTNQVLLMNGCDHQPVQTNVGD HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHEEEECCCEEEEECCCCCCCCCCHHH IIDNVKEDVDFELVHSNLVQYIEDVKKEVKDLKEVTGELNGQYTDGWWTLCNTASSRLYL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHEECCCCCEEEE KQMNNKSQVLLERYVEPLGVMASLEGKKYESDFILQAWKYLIQNHPHDSICGCSIDEVHQ ECCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH DMVTRFKSSMQISEEMIARSTEHMLNLVNGTTTDRESIVVFNTLGWDRSEVVEATVDVNK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHEEHHEECCC ESGIENFKVVTENGEEVPSVVEVLGETFKYTLPNNRFRQPEYVNRFKVKFLANNIKALGL CCCCCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHCCHHCCCC KSFKIVPCEKREEKEVSKDLTFENKFFSLKFNENGTFDLIHKGTNKEYKNLNAFEDCGDI CCEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCHHCCCCHHHHHCC GDEYIFRAPEKDLVVNTLGNKASINVLKDNEVEKVIEVKNTLEVPVKAIKKESRRVEETT CCHHEEECCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIKLVSTIILSEVSKRVDIKVEIENTAKDHRVRALFPTGIEASTHFAEGHFDVIERETTP HHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEEECCCCCCCCEECCCCHHHHCCCCCC WEGWQNPSNCQKQTNFVDVNDGKVGLMVANMGLPEYEVLRDGENTIALTILRSVGELGDW CCCCCCCHHHHHCCCEEEECCCEEEEEEEECCCCCHHHHCCCCCEEEHHHHHHHCCCCCC GVFKTPEAQCLGKNVAEYSIIAHEGDYTGERAYEEAYNLNTPMLALQGDFKDEDSLVSIK CCCCCCCHHHHCCCCHHEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEE GENVVLSAFKKAEDGDSIIVRIFNISDKEENFQIKVNRDVKEINEVNLNEELIEKLEVKE CCCEEEEEHHCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHH NAINGIISKKQIKTFEIVL HHHHHCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]