| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is entB [H]
Identifier: 18310336
GI number: 18310336
Start: 1597967
End: 1599616
Strand: Reverse
Name: entB [H]
Synonym: CPE1354
Alternate gene names: 18310336
Gene position: 1599616-1597967 (Counterclockwise)
Preceding gene: 18310337
Following gene: 18310335
Centisome position: 52.77
GC content: 32.12
Gene sequence:
>1650_bases ATGAATAGGAATAAGATAGCAGCTTTGATTTTTGCTGTATCAACAGTATGTGTTGTATCAGCACACAGTGAAAATGCTTA TGCAACAGAGCATAAAAATTCTAATCAATTAGAAGAAAATAATCAAACAAGATCGGTAAAAAAAGGGCAAGTTATAAATG TAAGTACGAATTTAAGAATTAGAAAGAGTCCAAATACAAGCAGTGATGTTATTGGATATTTAACTAATGGTGAAATTTTT AATATAGATGGAAAAGAAGGTTCATGGTATAAAATAAATGCTAATGGTAAAGTTGGCTATATTCATGGAGATTATGTTAA AGAAGTAACTGGAAATTCTAATAGTAGCAGCAATAATAGTGGAAGTAATTCAAATTTAGATACTTCATTAGCTGGGAAAA AGGGTACTGTTGTAAACGTAAGTACTTCTTTAAGAGTTAGACAATCACCAAGCACAAGTAGCTCAGTTGTAGGTAGCCTA AGAGGTGGTCAGACATTTGAGATAAAGGGTAAAAGTGGAAGTTGGTATTATATAAATGCAAATGGACTTACAGGCTATAT TCATGGAGATTATGTACAAGTAGGTGAAAATAGTTCAAATAATGGTGGGCAATCATCAGGAAATAATGGACAATCATCAG AAAATAACTCAGGAATGGATACTTCATTAGCAGGAAAAACTGGTAAGGTTGTAAATGTAAGTACTTCTTTAAGAATTAGA CAATCACCAAGTACAAGTAGCTCAGTTGTTGGATCATTAAGTGCAGGCCAAACTTTTAAGATAAATGGTAAAAATGGAGC TTGGTATAATATTGATGCACAAGGAACAAAAGGACATGTTCATGGAGATTATGTACAAGTATTAAGTGGAAACGAAAGTT CTAATAGTGGAAGTAATAATAATCAAAGTGGAAGCCAAAATAACAATTTAGATGAATCTTATAATGGAAAAGCTGGAAAG GTTGTAAATGTAACAACTAATTTAAGACTTAGAAGTCAACCTAGTACTAGTAGTTCTGTTTTAGCATATTTATTACCTAA TGAAAGATTTACTTTACAGGGAAAGACTTCTTCAGGATGGTTTAAAGTAAATTATAATGGAAAAATTGGTTATTTACATG AAGATTATGTTAAAATAGTATCTTCAGATGAAGGAGCAAATGGAAATACAGGTGGAAGCACAGGTGGTGGACAAGTTAAC CAAAGTAAATATGAACAAGTTTTAAGTATTATGAAGTCTCAAATTGGTTCTCCATATATTTATGGAGGTGCTGGAGAAAC ACTAACTTCAAGCTTATTAAGTAGCTTAAGAAGAACTTTCCCAGATCATGCTGCAAGAGGATTTTATGATATACCATCAA ACTATTTAAATGGAAATTACAGAGCTTTTGATTGCTCTGGATTAATGCAATGGAGTTTTAGACAAGCTGGAATTAGTTTA GGAAGAACAACTTGGGATCAAATAAACAATGGATATGAAGTTTCTCCAAGTAATGCTAAGCCAGGAGACTTATTATTCTT TAGTAATTTAGGCCATGTAGGTATGTATATAGGAAATGGTCAATGGATAGAGGCTCCTAACAAAGGTAAATTTGTTTCTA TTACATCTGTTCCATGGAGTAAAATAGGAAGAGCAAGAAGAGTTCTTTAA
Upstream 100 bases:
>100_bases TTGTAACTGTTTTATTGATAAATTTTACTAAAGAATATATTATAGAATATGAAGGATTATTTTAGGCAGGGCGTAATATG ACTACTAGGGAGGATTGTGT
Downstream 100 bases:
>100_bases GATTAACATAATAAATTTATTATAAAGCAAGTTATATTTAGTAATAGCTTACTAAATATGACTTGTTTTTTTTATTTATT CAATATACATTTTTTGTAAA
Product: enterotoxin
Products: NA
Alternate protein names: Invasion-associated protein [H]
Number of amino acids: Translated: 549; Mature: 549
Protein sequence:
>549_residues MNRNKIAALIFAVSTVCVVSAHSENAYATEHKNSNQLEENNQTRSVKKGQVINVSTNLRIRKSPNTSSDVIGYLTNGEIF NIDGKEGSWYKINANGKVGYIHGDYVKEVTGNSNSSSNNSGSNSNLDTSLAGKKGTVVNVSTSLRVRQSPSTSSSVVGSL RGGQTFEIKGKSGSWYYINANGLTGYIHGDYVQVGENSSNNGGQSSGNNGQSSENNSGMDTSLAGKTGKVVNVSTSLRIR QSPSTSSSVVGSLSAGQTFKINGKNGAWYNIDAQGTKGHVHGDYVQVLSGNESSNSGSNNNQSGSQNNNLDESYNGKAGK VVNVTTNLRLRSQPSTSSSVLAYLLPNERFTLQGKTSSGWFKVNYNGKIGYLHEDYVKIVSSDEGANGNTGGSTGGGQVN QSKYEQVLSIMKSQIGSPYIYGGAGETLTSSLLSSLRRTFPDHAARGFYDIPSNYLNGNYRAFDCSGLMQWSFRQAGISL GRTTWDQINNGYEVSPSNAKPGDLLFFSNLGHVGMYIGNGQWIEAPNKGKFVSITSVPWSKIGRARRVL
Sequences:
>Translated_549_residues MNRNKIAALIFAVSTVCVVSAHSENAYATEHKNSNQLEENNQTRSVKKGQVINVSTNLRIRKSPNTSSDVIGYLTNGEIF NIDGKEGSWYKINANGKVGYIHGDYVKEVTGNSNSSSNNSGSNSNLDTSLAGKKGTVVNVSTSLRVRQSPSTSSSVVGSL RGGQTFEIKGKSGSWYYINANGLTGYIHGDYVQVGENSSNNGGQSSGNNGQSSENNSGMDTSLAGKTGKVVNVSTSLRIR QSPSTSSSVVGSLSAGQTFKINGKNGAWYNIDAQGTKGHVHGDYVQVLSGNESSNSGSNNNQSGSQNNNLDESYNGKAGK VVNVTTNLRLRSQPSTSSSVLAYLLPNERFTLQGKTSSGWFKVNYNGKIGYLHEDYVKIVSSDEGANGNTGGSTGGGQVN QSKYEQVLSIMKSQIGSPYIYGGAGETLTSSLLSSLRRTFPDHAARGFYDIPSNYLNGNYRAFDCSGLMQWSFRQAGISL GRTTWDQINNGYEVSPSNAKPGDLLFFSNLGHVGMYIGNGQWIEAPNKGKFVSITSVPWSKIGRARRVL >Mature_549_residues MNRNKIAALIFAVSTVCVVSAHSENAYATEHKNSNQLEENNQTRSVKKGQVINVSTNLRIRKSPNTSSDVIGYLTNGEIF NIDGKEGSWYKINANGKVGYIHGDYVKEVTGNSNSSSNNSGSNSNLDTSLAGKKGTVVNVSTSLRVRQSPSTSSSVVGSL RGGQTFEIKGKSGSWYYINANGLTGYIHGDYVQVGENSSNNGGQSSGNNGQSSENNSGMDTSLAGKTGKVVNVSTSLRIR QSPSTSSSVVGSLSAGQTFKINGKNGAWYNIDAQGTKGHVHGDYVQVLSGNESSNSGSNNNQSGSQNNNLDESYNGKAGK VVNVTTNLRLRSQPSTSSSVLAYLLPNERFTLQGKTSSGWFKVNYNGKIGYLHEDYVKIVSSDEGANGNTGGSTGGGQVN QSKYEQVLSIMKSQIGSPYIYGGAGETLTSSLLSSLRRTFPDHAARGFYDIPSNYLNGNYRAFDCSGLMQWSFRQAGISL GRTTWDQINNGYEVSPSNAKPGDLLFFSNLGHVGMYIGNGQWIEAPNKGKFVSITSVPWSKIGRARRVL
Specific function: This major extracellular protein may be involved in the invasion of non-professional phagocytic cells by Listeria [H]
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 LysM repeats [H]
Homologues:
Organism=Escherichia coli, GI1788501, Length=96, Percent_Identity=43.75, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000064 - InterPro: IPR018392 - InterPro: IPR002482 - InterPro: IPR003646 - InterPro: IPR013247 [H]
Pfam domain/function: PF01476 LysM; PF00877 NLPC_P60; PF08239 SH3_3 [H]
EC number: NA
Molecular weight: Translated: 58669; Mature: 58669
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRNKIAALIFAVSTVCVVSAHSENAYATEHKNSNQLEENNQTRSVKKGQVINVSTNLRI CCCHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEE RKSPNTSSDVIGYLTNGEIFNIDGKEGSWYKINANGKVGYIHGDYVKEVTGNSNSSSNNS EECCCCCCCEEEEEECCEEEEEECCCCCEEEEECCCEEEEEECCHHHHHCCCCCCCCCCC GSNSNLDTSLAGKKGTVVNVSTSLRVRQSPSTSSSVVGSLRGGQTFEIKGKSGSWYYINA CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEC NGLTGYIHGDYVQVGENSSNNGGQSSGNNGQSSENNSGMDTSLAGKTGKVVNVSTSLRIR CCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE QSPSTSSSVVGSLSAGQTFKINGKNGAWYNIDAQGTKGHVHGDYVQVLSGNESSNSGSNN CCCCCCHHHEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC NQSGSQNNNLDESYNGKAGKVVNVTTNLRLRSQPSTSSSVLAYLLPNERFTLQGKTSSGW CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCE FKVNYNGKIGYLHEDYVKIVSSDEGANGNTGGSTGGGQVNQSKYEQVLSIMKSQIGSPYI EEEEECCEEEEEEHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE YGGAGETLTSSLLSSLRRTFPDHAARGFYDIPSNYLNGNYRAFDCSGLMQWSFRQAGISL ECCCCHHHHHHHHHHHHHHCCHHHHCCEEECCHHHCCCCEEEEECCCCHHHHHHHHCCCC GRTTWDQINNGYEVSPSNAKPGDLLFFSNLGHVGMYIGNGQWIEAPNKGKFVSITSVPWS CCCCHHHCCCCEEECCCCCCCCCEEEEECCCCEEEEECCCEEEECCCCCCEEEEECCCHH KIGRARRVL HHHHHHCCC >Mature Secondary Structure MNRNKIAALIFAVSTVCVVSAHSENAYATEHKNSNQLEENNQTRSVKKGQVINVSTNLRI CCCHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEE RKSPNTSSDVIGYLTNGEIFNIDGKEGSWYKINANGKVGYIHGDYVKEVTGNSNSSSNNS EECCCCCCCEEEEEECCEEEEEECCCCCEEEEECCCEEEEEECCHHHHHCCCCCCCCCCC GSNSNLDTSLAGKKGTVVNVSTSLRVRQSPSTSSSVVGSLRGGQTFEIKGKSGSWYYINA CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEC NGLTGYIHGDYVQVGENSSNNGGQSSGNNGQSSENNSGMDTSLAGKTGKVVNVSTSLRIR CCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE QSPSTSSSVVGSLSAGQTFKINGKNGAWYNIDAQGTKGHVHGDYVQVLSGNESSNSGSNN CCCCCCHHHEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC NQSGSQNNNLDESYNGKAGKVVNVTTNLRLRSQPSTSSSVLAYLLPNERFTLQGKTSSGW CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCE FKVNYNGKIGYLHEDYVKIVSSDEGANGNTGGSTGGGQVNQSKYEQVLSIMKSQIGSPYI EEEEECCEEEEEEHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE YGGAGETLTSSLLSSLRRTFPDHAARGFYDIPSNYLNGNYRAFDCSGLMQWSFRQAGISL ECCCCHHHHHHHHHHHHHHCCHHHHCCEEECCHHHCCCCEEEEECCCCHHHHHHHHCCCC GRTTWDQINNGYEVSPSNAKPGDLLFFSNLGHVGMYIGNGQWIEAPNKGKFVSITSVPWS CCCCHHHCCCCEEECCCCCCCCCEEEEECCCCEEEEECCCEEEECCCCCCEEEEECCCHH KIGRARRVL HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1514809; 11679669; 1459966 [H]