Click here to switch to the map view.

The map label for this gene is rubY [H]

Identifier: 18310313

GI number: 18310313

Start: 1571475

End: 1572011

Strand: Reverse

Name: rubY [H]

Synonym: CPE1331

Alternate gene names: 18310313

Gene position: 1572011-1571475 (Counterclockwise)

Preceding gene: 18310314

Following gene: 18310312

Centisome position: 51.86

GC content: 32.96

Gene sequence:

>537_bases
ATGAAAAGTTTAAAAGGATCTCAAACTGAAAAAAATCTTTACAAAACCTTTGCAGGAGAATGTCGTGCTCGAACAAAATA
TAATTTGTTTGCTGAAGAGGCAAGAGAGGAAGAACAACATTGGATAGCAGATATCTTTGATGAAACTGCTAAAAATGAAT
ATGCTCATGCTAGAGAAGTTTTTAGAAGATTTTTAGGTAATGTAGGAGACATACTAGATAACCTTATGGTAGCAGCTATG
GGGGAAAGTGATGAATTTAAAGAAATATATAAAGAGTTTGAAGAAACAGCACGTAGTGAAGGCTATGAGGAAATAGCAGA
CTTTTTTAAGGAACTTAGAGAGGTAGAGGAATCTCATAATGAAAGATATATGGACTTTTATGATAAGGTTAAATCAAAAA
GTTTATATTCATCAAAAGAACCTGTGAAATGGGTATGTACAAACTGTGGATATATCCATGAAGGAAAAGAAGCGCCAATG
AATTGTCCTCTATGTAGATTCCCTCAAGGATACTTTAGACTTTTAAATGAATGTTAG

Upstream 100 bases:

>100_bases
CAGTAAGGGTAAAGATGGGTCAGATATATTATTTATGTGTGATGAATAGGAAAAAACTTTCATATTATAGAATATAAATA
ATATAAAATATGGAGTTAAT

Downstream 100 bases:

>100_bases
TATTAAAGAGGAGACTTTTAAATGGGACAAATCGAGATTTTTAGAAAACATTTTAAAGAGGTTAATAATTTAAGTACTGT
TTTAAGTAGTTATGCTAATA

Product: rubrerythrin

Products: NA

Alternate protein names: RR [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKSLKGSQTEKNLYKTFAGECRARTKYNLFAEEAREEEQHWIADIFDETAKNEYAHAREVFRRFLGNVGDILDNLMVAAM
GESDEFKEIYKEFEETARSEGYEEIADFFKELREVEESHNERYMDFYDKVKSKSLYSSKEPVKWVCTNCGYIHEGKEAPM
NCPLCRFPQGYFRLLNEC

Sequences:

>Translated_178_residues
MKSLKGSQTEKNLYKTFAGECRARTKYNLFAEEAREEEQHWIADIFDETAKNEYAHAREVFRRFLGNVGDILDNLMVAAM
GESDEFKEIYKEFEETARSEGYEEIADFFKELREVEESHNERYMDFYDKVKSKSLYSSKEPVKWVCTNCGYIHEGKEAPM
NCPLCRFPQGYFRLLNEC
>Mature_178_residues
MKSLKGSQTEKNLYKTFAGECRARTKYNLFAEEAREEEQHWIADIFDETAKNEYAHAREVFRRFLGNVGDILDNLMVAAM
GESDEFKEIYKEFEETARSEGYEEIADFFKELREVEESHNERYMDFYDKVKSKSLYSSKEPVKWVCTNCGYIHEGKEAPM
NCPLCRFPQGYFRLLNEC

Specific function: May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide [H]

COG id: COG1592

COG function: function code C; Rubrerythrin

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rubredoxin-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009040
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR004039
- InterPro:   IPR003251 [H]

Pfam domain/function: PF02915 Rubrerythrin [H]

EC number: NA

Molecular weight: Translated: 21034; Mature: 21034

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50903 RUBREDOXIN_LIKE ; PS50905 FERRITIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLKGSQTEKNLYKTFAGECRARTKYNLFAEEAREEEQHWIADIFDETAKNEYAHAREV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRRFLGNVGDILDNLMVAAMGESDEFKEIYKEFEETARSEGYEEIADFFKELREVEESHN
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
ERYMDFYDKVKSKSLYSSKEPVKWVCTNCGYIHEGKEAPMNCPLCRFPQGYFRLLNEC
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKSLKGSQTEKNLYKTFAGECRARTKYNLFAEEAREEEQHWIADIFDETAKNEYAHAREV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRRFLGNVGDILDNLMVAAMGESDEFKEIYKEFEETARSEGYEEIADFFKELREVEESHN
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
ERYMDFYDKVKSKSLYSSKEPVKWVCTNCGYIHEGKEAPMNCPLCRFPQGYFRLLNEC
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1932032; 1657933; 8383040; 1958203; 2835096; 8646540; 10201393; 10968622; 12175244; 12459910 [H]