| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310182
Identifier: 18310182
GI number: 18310182
Start: 1402014
End: 1403120
Strand: Reverse
Name: 18310182
Synonym: CPE1200
Alternate gene names: NA
Gene position: 1403120-1402014 (Counterclockwise)
Preceding gene: 18310183
Following gene: 18310181
Centisome position: 46.29
GC content: 28.73
Gene sequence:
>1107_bases ATGAACAAGACTTATGATTTTAAAAGCATAACAGAAAATTTTAATTTAGAGGGAGAGCTAAAAACATCAGATAGCCATGT TTGTGGTCATATAAATGATACATTTATAATAAATTGTGAAGGGGAAAATGGAGAAGAAATAAAATATGTTCTTCAAAGAG TAAACTCTGACATATTCAAAAATCCAGAGCAACTAATGGAGAATATTGAAAATGTTACTTCACATATAAAAAATAAAATT ATAGAAGAAAATGGAGACCCTTTAAGGGAAACTTTAAATATAGTGAAGACAAAAGAAGGTAAAAATTTTTATAAATGCAA AGAGGGAAATTATTGGAGAATTTTTAATTTCATACATGACGCTAGTACCTATCAAATAGTTGAAAAACCTGAGCATTTAT ATACAGCTGGTAAGGCTTTAGGAAAATTCCAAAAGCAATTATCAGATTTTAATGTTGATATGCTTTATGATACAATCCCT GATTTTCATAATACAGAAAAGAGATTTGAGGCATTTATGGAAGCTGTAAGGGAAGATAAAAAAGGAAGAGCAAAGGATGT AAAAGAAGAAATAGATTTTGTAATTAACCGTGCTGAAGATACAAAAGTTTTAGTAAATATGATAAAAGAAAATAAACTTC CTTTAAGAGTTACTCATAATGATACAAAGTTTAATAATATAATGATAGATGATGAAACAGGAGAAGGAATTGCAGTTATT GATTTAGATACTGTTATGCCAGGACTATCACTATATGACTTTGGAGATTCTATTCGTTCTGGAGCTACAACTGCTTTAGA AGATGAAGTGGATTTATCTAAGGTAAACTTTGATTTAAATCTTTATGAGCATTTTACAAAAGGGTTTTTAGAGTCAGCAG GGGATGCCTTTACAAAAGAGGAAATTGAATATTTACCTTTTGCAGCTAAACTTATGACCTTTGAATGTGGAATGAGATTT CTTATGGATTATTTAAATGGAGATGTTTACTTTAAAATACATAGGGAAAATCACAACTTAGATAGAGCTAGAAATCAATT TAAGCTTGTTTCTGATATGGAAAAAGAAATGGACAATATGAAGAAGATAGTATATTCATACATTTAA
Upstream 100 bases:
>100_bases GGAGTTACTTATAAAGAGGATAAAGAAAGCGTTAGGGATTCTTTAAAAAATTTATCTAAAAAAATTTATCCAGATGATTT GTGGGAGGAGTTTAAATAAA
Downstream 100 bases:
>100_bases AAACTCTATTTTTATGAAAATATATTTGTCATTCTTTAAAACATTATAAATTTAGATAATCCTAATATGGAATTTAGACA CTGTTTAAAATGTACAAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: Mucin-Desulfating Sulfatase; Desulfatase Possibly For Mucin; N-Acetylhexosamine-1-Kinase NahK; Phosphotransferase Family Protein; Phosphotransferase Family; Homoserine/Choline Kinase Family Protein; Desulfatase; Phosphotransferase
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MNKTYDFKSITENFNLEGELKTSDSHVCGHINDTFIINCEGENGEEIKYVLQRVNSDIFKNPEQLMENIENVTSHIKNKI IEENGDPLRETLNIVKTKEGKNFYKCKEGNYWRIFNFIHDASTYQIVEKPEHLYTAGKALGKFQKQLSDFNVDMLYDTIP DFHNTEKRFEAFMEAVREDKKGRAKDVKEEIDFVINRAEDTKVLVNMIKENKLPLRVTHNDTKFNNIMIDDETGEGIAVI DLDTVMPGLSLYDFGDSIRSGATTALEDEVDLSKVNFDLNLYEHFTKGFLESAGDAFTKEEIEYLPFAAKLMTFECGMRF LMDYLNGDVYFKIHRENHNLDRARNQFKLVSDMEKEMDNMKKIVYSYI
Sequences:
>Translated_368_residues MNKTYDFKSITENFNLEGELKTSDSHVCGHINDTFIINCEGENGEEIKYVLQRVNSDIFKNPEQLMENIENVTSHIKNKI IEENGDPLRETLNIVKTKEGKNFYKCKEGNYWRIFNFIHDASTYQIVEKPEHLYTAGKALGKFQKQLSDFNVDMLYDTIP DFHNTEKRFEAFMEAVREDKKGRAKDVKEEIDFVINRAEDTKVLVNMIKENKLPLRVTHNDTKFNNIMIDDETGEGIAVI DLDTVMPGLSLYDFGDSIRSGATTALEDEVDLSKVNFDLNLYEHFTKGFLESAGDAFTKEEIEYLPFAAKLMTFECGMRF LMDYLNGDVYFKIHRENHNLDRARNQFKLVSDMEKEMDNMKKIVYSYI >Mature_368_residues MNKTYDFKSITENFNLEGELKTSDSHVCGHINDTFIINCEGENGEEIKYVLQRVNSDIFKNPEQLMENIENVTSHIKNKI IEENGDPLRETLNIVKTKEGKNFYKCKEGNYWRIFNFIHDASTYQIVEKPEHLYTAGKALGKFQKQLSDFNVDMLYDTIP DFHNTEKRFEAFMEAVREDKKGRAKDVKEEIDFVINRAEDTKVLVNMIKENKLPLRVTHNDTKFNNIMIDDETGEGIAVI DLDTVMPGLSLYDFGDSIRSGATTALEDEVDLSKVNFDLNLYEHFTKGFLESAGDAFTKEEIEYLPFAAKLMTFECGMRF LMDYLNGDVYFKIHRENHNLDRARNQFKLVSDMEKEMDNMKKIVYSYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42830; Mature: 42830
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTYDFKSITENFNLEGELKTSDSHVCGHINDTFIINCEGENGEEIKYVLQRVNSDIFK CCCCCCHHHHHHCCCCCEEEECCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHCCHHHC NPEQLMENIENVTSHIKNKIIEENGDPLRETLNIVKTKEGKNFYKCKEGNYWRIFNFIHD CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHC ASTYQIVEKPEHLYTAGKALGKFQKQLSDFNVDMLYDTIPDFHNTEKRFEAFMEAVREDK CCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHC KGRAKDVKEEIDFVINRAEDTKVLVNMIKENKLPLRVTHNDTKFNNIMIDDETGEGIAVI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCEEEEE DLDTVMPGLSLYDFGDSIRSGATTALEDEVDLSKVNFDLNLYEHFTKGFLESAGDAFTKE EHHHHCCCCEEECCCHHHHCCCCCHHCCCCCHHHEEECHHHHHHHHHHHHHHCCCHHHHH EIEYLPFAAKLMTFECGMRFLMDYLNGDVYFKIHRENHNLDRARNQFKLVSDMEKEMDNM HHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH KKIVYSYI HHHHHHCC >Mature Secondary Structure MNKTYDFKSITENFNLEGELKTSDSHVCGHINDTFIINCEGENGEEIKYVLQRVNSDIFK CCCCCCHHHHHHCCCCCEEEECCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHCCHHHC NPEQLMENIENVTSHIKNKIIEENGDPLRETLNIVKTKEGKNFYKCKEGNYWRIFNFIHD CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHC ASTYQIVEKPEHLYTAGKALGKFQKQLSDFNVDMLYDTIPDFHNTEKRFEAFMEAVREDK CCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHC KGRAKDVKEEIDFVINRAEDTKVLVNMIKENKLPLRVTHNDTKFNNIMIDDETGEGIAVI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCEEEEE DLDTVMPGLSLYDFGDSIRSGATTALEDEVDLSKVNFDLNLYEHFTKGFLESAGDAFTKE EHHHHCCCCEEECCCHHHHCCCCCHHCCCCCHHHEEECHHHHHHHHHHHHHHCCCHHHHH EIEYLPFAAKLMTFECGMRFLMDYLNGDVYFKIHRENHNLDRARNQFKLVSDMEKEMDNM HHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH KKIVYSYI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA