| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310086
Identifier: 18310086
GI number: 18310086
Start: 1306795
End: 1307226
Strand: Direct
Name: 18310086
Synonym: CPE1104
Alternate gene names: NA
Gene position: 1306795-1307226 (Clockwise)
Preceding gene: 18310085
Following gene: 18310087
Centisome position: 43.11
GC content: 31.02
Gene sequence:
>432_bases ATGGGAATATTAGAAATACCATGTAGAATAACTCACTATCCTGATTATGATGAAAAATTCAATAGGACTAAAGATGATAT GATACTTGAAGATTTAATATCAACAAACATAATGCAAAGAGGTGTTGGAAATGTTAATCCTATGAAAATGGCTAAATGTA TTATGGAACTTGAGAGGATTAAGGGAATTTACAAAGGTAATCATCAAAAAGTGAAGCAAGATAATCTTACTTCACAATAT TCACAAAAAGATATGGCTGAGGAATTAGGAATCACTAGACAACAACTTCAAGATTATAAAAAACTTTTAAATCTTATTCC TGAACTCCAACAAATGGTTGAGAATGGTTCTATGAAGGCTACAGTAGGCTATAAAATATGGGCTAAAATGCCACAGGAGG AACAAGAGAAGCTTTTTAATGATATTGGTTGA
Upstream 100 bases:
>100_bases AATGAAAATAAATATGGGCTAGAATGCCCTCAGAAGAACAAGAAAAGTTTTTTAATAATATTGGTTGAGTGGACATCAAA GAGTGAGGGCTTGTGAAGAA
Downstream 100 bases:
>100_bases GTGGACACCAAAGAGTGAGGGCTTGTAAGGACTTAGGAATTAATTTAGTTCCAGTAATAATCAATGAAGAATTATTAGAT GAAGATGAAAAATTAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MGILEIPCRITHYPDYDEKFNRTKDDMILEDLISTNIMQRGVGNVNPMKMAKCIMELERIKGIYKGNHQKVKQDNLTSQY SQKDMAEELGITRQQLQDYKKLLNLIPELQQMVENGSMKATVGYKIWAKMPQEEQEKLFNDIG
Sequences:
>Translated_143_residues MGILEIPCRITHYPDYDEKFNRTKDDMILEDLISTNIMQRGVGNVNPMKMAKCIMELERIKGIYKGNHQKVKQDNLTSQY SQKDMAEELGITRQQLQDYKKLLNLIPELQQMVENGSMKATVGYKIWAKMPQEEQEKLFNDIG >Mature_142_residues GILEIPCRITHYPDYDEKFNRTKDDMILEDLISTNIMQRGVGNVNPMKMAKCIMELERIKGIYKGNHQKVKQDNLTSQYS QKDMAEELGITRQQLQDYKKLLNLIPELQQMVENGSMKATVGYKIWAKMPQEEQEKLFNDIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16687; Mature: 16555
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 7.0 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 6.3 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILEIPCRITHYPDYDEKFNRTKDDMILEDLISTNIMQRGVGNVNPMKMAKCIMELERI CCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH KGIYKGNHQKVKQDNLTSQYSQKDMAEELGITRQQLQDYKKLLNLIPELQQMVENGSMKA HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE TVGYKIWAKMPQEEQEKLFNDIG EHHHHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure GILEIPCRITHYPDYDEKFNRTKDDMILEDLISTNIMQRGVGNVNPMKMAKCIMELERI CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH KGIYKGNHQKVKQDNLTSQYSQKDMAEELGITRQQLQDYKKLLNLIPELQQMVENGSMKA HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE TVGYKIWAKMPQEEQEKLFNDIG EHHHHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA