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The map label for this gene is rnfB [H]

Identifier: 18310047

GI number: 18310047

Start: 1272333

End: 1273139

Strand: Direct

Name: rnfB [H]

Synonym: CPE1065

Alternate gene names: 18310047

Gene position: 1272333-1273139 (Clockwise)

Preceding gene: 18310046

Following gene: 18310048

Centisome position: 41.97

GC content: 31.23

Gene sequence:

>807_bases
ATGGATTTTTCAAGTATATTATATTCTATTTTAATTTTAGGTGTATTAGGTTTTTTATTTGGGATTCTTTTAGGCTTTGC
ATCTAAAAAGTTTGAAGTTAAAGTAGATGAGAGAGTTACTAAAATAAGAGCAATTTTACCAGGGGCTAACTGTGGAGGAT
GTGGCTATCCAGGATGTGATGCTTATGCTAATGCTTTAGTTGAAGAAGGAGCTGATATGAGCCTATGCGGAGTAGGTGGA
CCAAATGTAGCTAAGCAGATTGGTGAAATATTAGGAGTAAAGGTTAAACCGGTTGAAAAAAAAGTTGCTTTTGTAAAATG
TATGGGAGATTGTAAAAACAAAAAAATTCAATTAAATATTCCAAAAGATAAAACCTGTATAGAAGCTAAAGAATTTTTAA
GCGATAAAGAAAGTGAAGGTTGTGGCTTTGGATGCTTTGGGTTAGGAAGTTGTAAAGAAGCATGTAAATTTGGAGCTATA
AGTATTGTAGATGGCATAGCAAAAATTGACTCTTCAAAATGTGTAGCATGTAAGGCTTGTATAAGAGTATGCCCACAAAA
CCTTATAGATATAATAAAGGATGATCAAAAGGTAATTGTTAATTGTAATTCCAATGATAGTGGAAAAATTGTAAATAAGA
ATTGTTCCGTAGGCTGTATAGGATGTAAGCTATGTGAAAAAAATTGTCCGAATGGAGCTATAAAGGTTGAAAATAATCTT
GCAATAATTGATTATGAAAAATGTACTTCTTGTGGACTATGTGTATCAAAATGTCCTAAAAAAGCAATAAATTTAAGAAA
GAAATAA

Upstream 100 bases:

>100_bases
CCTTATTTTAGAGGGTTACCAATAACTCTTTTTACAGCAGCACTTATGTCTATAGCCTTTTTAGGATTCCAAGGACTTAT
ATAAATAAGGAGGCGATTAA

Downstream 100 bases:

>100_bases
CAATGAATTTTTTTAAAACACTTGAAAAAAAATAAAAAAACTTTAAAATTAGTGTTAAGTTTCTATTTAGGAGGGTTAAT
ATGATTAGCAAAAGAGAAGA

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MDFSSILYSILILGVLGFLFGILLGFASKKFEVKVDERVTKIRAILPGANCGGCGYPGCDAYANALVEEGADMSLCGVGG
PNVAKQIGEILGVKVKPVEKKVAFVKCMGDCKNKKIQLNIPKDKTCIEAKEFLSDKESEGCGFGCFGLGSCKEACKFGAI
SIVDGIAKIDSSKCVACKACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPNGAIKVENNL
AIIDYEKCTSCGLCVSKCPKKAINLRKK

Sequences:

>Translated_268_residues
MDFSSILYSILILGVLGFLFGILLGFASKKFEVKVDERVTKIRAILPGANCGGCGYPGCDAYANALVEEGADMSLCGVGG
PNVAKQIGEILGVKVKPVEKKVAFVKCMGDCKNKKIQLNIPKDKTCIEAKEFLSDKESEGCGFGCFGLGSCKEACKFGAI
SIVDGIAKIDSSKCVACKACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPNGAIKVENNL
AIIDYEKCTSCGLCVSKCPKKAINLRKK
>Mature_268_residues
MDFSSILYSILILGVLGFLFGILLGFASKKFEVKVDERVTKIRAILPGANCGGCGYPGCDAYANALVEEGADMSLCGVGG
PNVAKQIGEILGVKVKPVEKKVAFVKCMGDCKNKKIQLNIPKDKTCIEAKEFLSDKESEGCGFGCFGLGSCKEACKFGAI
SIVDGIAKIDSSKCVACKACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPNGAIKVENNL
AIIDYEKCTSCGLCVSKCPKKAINLRKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=190, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 28507; Mature: 28507

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.4 %Cys+Met (Translated Protein)
9.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSSILYSILILGVLGFLFGILLGFASKKFEVKVDERVTKIRAILPGANCGGCGYPGCD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCHH
AYANALVEEGADMSLCGVGGPNVAKQIGEILGVKVKPVEKKVAFVKCMGDCKNKKIQLNI
HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
PKDKTCIEAKEFLSDKESEGCGFGCFGLGSCKEACKFGAISIVDGIAKIDSSKCVACKAC
CCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
IRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPNGAIKVENNL
HHHCCHHHHHHHCCCCEEEEECCCCCCCCEEECCCCEEEEHHHHHHCCCCCCEEEEECCE
AIIDYEKCTSCGLCVSKCPKKAINLRKK
EEEEHHHCCCCCHHHHHCCHHHHCCCCC
>Mature Secondary Structure
MDFSSILYSILILGVLGFLFGILLGFASKKFEVKVDERVTKIRAILPGANCGGCGYPGCD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCHH
AYANALVEEGADMSLCGVGGPNVAKQIGEILGVKVKPVEKKVAFVKCMGDCKNKKIQLNI
HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
PKDKTCIEAKEFLSDKESEGCGFGCFGLGSCKEACKFGAISIVDGIAKIDSSKCVACKAC
CCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
IRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPNGAIKVENNL
HHHCCHHHHHHHCCCCEEEEECCCCCCCCEEECCCCEEEEHHHHHHCCCCCCEEEEECCE
AIIDYEKCTSCGLCVSKCPKKAINLRKK
EEEEHHHCCCCCHHHHHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA