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The map label for this gene is nqrD [H]

Identifier: 18310045

GI number: 18310045

Start: 1271044

End: 1271712

Strand: Direct

Name: nqrD [H]

Synonym: CPE1063

Alternate gene names: 18310045

Gene position: 1271044-1271712 (Clockwise)

Preceding gene: 18310044

Following gene: 18310046

Centisome position: 41.93

GC content: 30.94

Gene sequence:

>669_bases
TTGAAAGTTTTATTTGAAAGATTAAAAAATGGTATAGTTACTGAAAATCCTATATTTGTTCAAGTATTAGCTATGTGTCC
AACCCTAGCAGTTACTTCAAGTGTTGAAAATGCCGTGGGCATGGGAATAGCTTCTACAGTGGTTTTAATTTTTTCTAATA
TGATAATTTCAGCCTTAAGAAAGTTTATACCAAATAAAATAAGAATTCCTGCATATATAGTTATAATTGCATCCTTTGTT
ACTGTGGTTGATATGTTAATGAATGCTTATGTTCAATCATTATATAAATCCTTAGGAATTTTCATACCTCTTATAGTAGT
TAACTGCGTTATATTAGGGAGAGCTGAGGCTTATGCTTCAAATAACAAAATCCTACCATCTATTTTTGATGCCATTGGAA
TGGGAATTGGATTTACTATAGCGTTATTTTCTATAGGAACTTTTAGAGAAATATTAGGGGCTGGAACATTTTTGGGAATG
AACATCATGCCAGAGGGATTTAAGCCTGCTACTATTATGATATTAGCTCCAGGAGCATTTTTAACCTTAGGAGCATTAAT
GACTTTCTTAAATTATAGAAACATAAAGAAAGCTAAAAACGAAGGTAAAAAAGCTAAATGTTTAGAACATAATTGTAGTA
CTTGTTCTGGATGCGGTAAAAATTCTTAA

Upstream 100 bases:

>100_bases
TAAGCGGAGCAACTAAGAGCTCAATGGCTATTATAAAAGGAATTACTAATGTGATTAATTTCTATAATAATAATCTTAGT
TAAATTAGGGAGGGATATTT

Downstream 100 bases:

>100_bases
TAAAATATAGGGATTAGAGGTGAAATTTATGGAATTATTTCTGATTTTTATTGGAGCTATGCTTGTTAATAACTTTGTTT
TATCACAATTTTTAGGAATA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKVLFERLKNGIVTENPIFVQVLAMCPTLAVTSSVENAVGMGIASTVVLIFSNMIISALRKFIPNKIRIPAYIVIIASFV
TVVDMLMNAYVQSLYKSLGIFIPLIVVNCVILGRAEAYASNNKILPSIFDAIGMGIGFTIALFSIGTFREILGAGTFLGM
NIMPEGFKPATIMILAPGAFLTLGALMTFLNYRNIKKAKNEGKKAKCLEHNCSTCSGCGKNS

Sequences:

>Translated_222_residues
MKVLFERLKNGIVTENPIFVQVLAMCPTLAVTSSVENAVGMGIASTVVLIFSNMIISALRKFIPNKIRIPAYIVIIASFV
TVVDMLMNAYVQSLYKSLGIFIPLIVVNCVILGRAEAYASNNKILPSIFDAIGMGIGFTIALFSIGTFREILGAGTFLGM
NIMPEGFKPATIMILAPGAFLTLGALMTFLNYRNIKKAKNEGKKAKCLEHNCSTCSGCGKNS
>Mature_222_residues
MKVLFERLKNGIVTENPIFVQVLAMCPTLAVTSSVENAVGMGIASTVVLIFSNMIISALRKFIPNKIRIPAYIVIIASFV
TVVDMLMNAYVQSLYKSLGIFIPLIVVNCVILGRAEAYASNNKILPSIFDAIGMGIGFTIALFSIGTFREILGAGTFLGM
NIMPEGFKPATIMILAPGAFLTLGALMTFLNYRNIKKAKNEGKKAKCLEHNCSTCSGCGKNS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=203, Percent_Identity=43.8423645320197, Blast_Score=143, Evalue=8e-36,
Organism=Escherichia coli, GI1787914, Length=173, Percent_Identity=27.7456647398844, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 23928; Mature: 23928

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLFERLKNGIVTENPIFVQVLAMCPTLAVTSSVENAVGMGIASTVVLIFSNMIISALR
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFIPNKIRIPAYIVIIASFVTVVDMLMNAYVQSLYKSLGIFIPLIVVNCVILGRAEAYAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
NNKILPSIFDAIGMGIGFTIALFSIGTFREILGAGTFLGMNIMPEGFKPATIMILAPGAF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEECCHHH
LTLGALMTFLNYRNIKKAKNEGKKAKCLEHNCSTCSGCGKNS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKVLFERLKNGIVTENPIFVQVLAMCPTLAVTSSVENAVGMGIASTVVLIFSNMIISALR
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFIPNKIRIPAYIVIIASFVTVVDMLMNAYVQSLYKSLGIFIPLIVVNCVILGRAEAYAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
NNKILPSIFDAIGMGIGFTIALFSIGTFREILGAGTFLGMNIMPEGFKPATIMILAPGAF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEECCHHH
LTLGALMTFLNYRNIKKAKNEGKKAKCLEHNCSTCSGCGKNS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA