| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310005
Identifier: 18310005
GI number: 18310005
Start: 1225337
End: 1225807
Strand: Reverse
Name: 18310005
Synonym: CPE1023
Alternate gene names: NA
Gene position: 1225807-1225337 (Counterclockwise)
Preceding gene: 18310008
Following gene: 18309997
Centisome position: 40.44
GC content: 22.29
Gene sequence:
>471_bases TTGATAAAAAAAATTACTAAAATATTTTTAATAACCCTATGTTTTTCTCTTCTTTTAATTTCATGTTCTAAAATTAATAG TCCTTCTAAGGAAAAACCTTCTTTAAACTATCACACTAAAAATTTAAGTGAACTAGTTTCTAAGAATAATATAAAAATCA GATTATTAGATATGAATATTTATAGTGAAGTTATTGTTGATAATGAAGATGTAAGAATTATTGATGACTTATTAAAAAGC TTAAAAGATTCTAACTTTATAAATGAGGAAGCTTTACCTAATAAACCTTTATATAAAATTTTTATTGATTTAAACAGCGA AAAATATGTAATAGATATTTATGGTGATGACTTAATAACTCTTTACCCTTGGGATAGTGATGTAAGAAAGGATTACTTAA GTTTAAAAGACATTCCTAACTCCTTTAAATTAGAACCATTTTGCCAGTATGTTTTTAATAAAAAACAATAA
Upstream 100 bases:
>100_bases TTAATTATAAGAACAATTGTAATATATATTATTCATTTTCTTTAAAAAAGTTCTACTAAAAACATAAGTTTCATAAATTA AACTGAAGGAGGTGATAAAT
Downstream 100 bases:
>100_bases AAAAAGATATAGGATTTAGTAGTGATTTATACTAAATTCTATATCTTTATTAATAATAGATTGTTTATATTTATTTATTT TTATTTAATTCTTCTAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MIKKITKIFLITLCFSLLLISCSKINSPSKEKPSLNYHTKNLSELVSKNNIKIRLLDMNIYSEVIVDNEDVRIIDDLLKS LKDSNFINEEALPNKPLYKIFIDLNSEKYVIDIYGDDLITLYPWDSDVRKDYLSLKDIPNSFKLEPFCQYVFNKKQ
Sequences:
>Translated_156_residues MIKKITKIFLITLCFSLLLISCSKINSPSKEKPSLNYHTKNLSELVSKNNIKIRLLDMNIYSEVIVDNEDVRIIDDLLKS LKDSNFINEEALPNKPLYKIFIDLNSEKYVIDIYGDDLITLYPWDSDVRKDYLSLKDIPNSFKLEPFCQYVFNKKQ >Mature_156_residues MIKKITKIFLITLCFSLLLISCSKINSPSKEKPSLNYHTKNLSELVSKNNIKIRLLDMNIYSEVIVDNEDVRIIDDLLKS LKDSNFINEEALPNKPLYKIFIDLNSEKYVIDIYGDDLITLYPWDSDVRKDYLSLKDIPNSFKLEPFCQYVFNKKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18275; Mature: 18275
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKITKIFLITLCFSLLLISCSKINSPSKEKPSLNYHTKNLSELVSKNNIKIRLLDMNI CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCH YSEVIVDNEDVRIIDDLLKSLKDSNFINEEALPNKPLYKIFIDLNSEKYVIDIYGDDLIT HHHEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCEEE LYPWDSDVRKDYLSLKDIPNSFKLEPFCQYVFNKKQ EECCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC >Mature Secondary Structure MIKKITKIFLITLCFSLLLISCSKINSPSKEKPSLNYHTKNLSELVSKNNIKIRLLDMNI CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCH YSEVIVDNEDVRIIDDLLKSLKDSNFINEEALPNKPLYKIFIDLNSEKYVIDIYGDDLIT HHHEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCEEE LYPWDSDVRKDYLSLKDIPNSFKLEPFCQYVFNKKQ EECCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA