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The map label for this gene is spoVAF [H]

Identifier: 18309966

GI number: 18309966

Start: 1184746

End: 1186167

Strand: Reverse

Name: spoVAF [H]

Synonym: CPE0984

Alternate gene names: 18309966

Gene position: 1186167-1184746 (Counterclockwise)

Preceding gene: 18309967

Following gene: 18309965

Centisome position: 39.13

GC content: 30.73

Gene sequence:

>1422_bases
TTGGACTTAACATCAAATTTTGATAAAAATATAAATACTTTATCTAAAGCTTTAAGGGTTGGAAAAAGTTTTGATATAAT
TGAGCGTTCAATAATAATTGGGGATAAAAAAGCCACAATGTATTATATTGATGGATTTGTAAAAGATGACGTAATGGAAT
TAATCATGAGTGACTTCTTTTCCTTAAGCAAAACTGAAATGAACTTAATAAAATCACCTAAAGATTTTATGAGAAGACAA
ATCCCTTATGTTGAAGTAGCTGAAGAAGTATCCATAGATAAAATAGTGTCTCAAGTTCTCTGTGGACAGACAGCATTAAT
TTTAGAAGGATTCTCCAGTGCAATAATGATAGATTTAAGAACCTATCCAGTTAGAGGGCCTCAAGAACCAGAAACTGAAA
AAGTATTAAGGGGTTCTAGGGATGGCTTTGTAGAGACCATTGTATTTAATACTGCATTAATTAGAAGAAGAATAAGAGAT
CCTAGACTTACCTTTGAAATGATGTCTATAGGAAATGTATCAAAAACAGATGTTGTTATATCATTTTTAGACGAGGTAGT
TGATAAAAAAACTCTTAATCTAATAAAAAAGAAATTTGAAAACTTAGATATACAAGCATTAACCATGAGCGAACAAAGCC
TTGTTGAATCTCTTTCAAATGCCTCATGGTATAATCCATTCCCTAAGGTTAGATATACAGAAAGGCCTGATGTTGCAGCT
GCCCATATAACAGAGGGAAAGATAGTTGTTATTATAGATAACTCTCCTTCAGTTATAATTTTACCAACTACTATATTTGA
TTTTATACAGGATGTTGATGATTATTATCTTCCTGTAATAACAGGTAATTTTATTCGTTTAATAAGAAATTTCATACTAA
TTTCTACTATTTTTATAACCCCACTTTATTTGCTTTTAATCCAAAATGCCTATAGAATACCTGATTACTTAAAATTTTTA
TTACCTGTTGATGGATATAAAGTTCCATTGATAGTTCAATTTTTACTTCTTGAAGTTGCAGTAGATGGATTAAAACTTGC
CTCTTTAAATACGCCAAATGCCCTTGGTATGTCCTTATCTGTTATTGGAGGATTAATACTTGGTCAATTTGCTGTAGATA
CTGGGTGGTTTTTACCACAAACCATATTATATATGGCCATAGTTACACTAGGAAGCTTTTCTCAACCTAGTTTAGAACTT
AGCTATGCCTTAAAGTTTTGGAGAACACTCCTACTCATATTAACAAGCCTATTCAATGTAATAGGATTTTTTATAGGATT
AATAATAGGAATAGTTTTAATTGCAAGTAATAAAACTTTAACTGGTGATTCCTACCTGTATCCTCTTATTCCCCTTGACT
GGAAAGCACTTAAAGCACTTATATTTAGAGTAAGATTAGTACCTAAGCAAAAAGAAGAATAA

Upstream 100 bases:

>100_bases
GTTTTTTTATTATAATACCAAGCTCTAAAATTATTAAAGGAATATTATTTATTCTCCTTTGAAATAATAAGTTTATATTA
TTTACTAAGGAGGAATTTTT

Downstream 100 bases:

>100_bases
TAAAAATTTATTAATTTTCTTAAATTTTCATTTAATAAATAATATTTAATAAAAAAGAAGGATTTTGTTAAATATTGTAG
TAATTAATACTCTATAGGAG

Product: stage V sporulation protein AF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MDLTSNFDKNINTLSKALRVGKSFDIIERSIIIGDKKATMYYIDGFVKDDVMELIMSDFFSLSKTEMNLIKSPKDFMRRQ
IPYVEVAEEVSIDKIVSQVLCGQTALILEGFSSAIMIDLRTYPVRGPQEPETEKVLRGSRDGFVETIVFNTALIRRRIRD
PRLTFEMMSIGNVSKTDVVISFLDEVVDKKTLNLIKKKFENLDIQALTMSEQSLVESLSNASWYNPFPKVRYTERPDVAA
AHITEGKIVVIIDNSPSVIILPTTIFDFIQDVDDYYLPVITGNFIRLIRNFILISTIFITPLYLLLIQNAYRIPDYLKFL
LPVDGYKVPLIVQFLLLEVAVDGLKLASLNTPNALGMSLSVIGGLILGQFAVDTGWFLPQTILYMAIVTLGSFSQPSLEL
SYALKFWRTLLLILTSLFNVIGFFIGLIIGIVLIASNKTLTGDSYLYPLIPLDWKALKALIFRVRLVPKQKEE

Sequences:

>Translated_473_residues
MDLTSNFDKNINTLSKALRVGKSFDIIERSIIIGDKKATMYYIDGFVKDDVMELIMSDFFSLSKTEMNLIKSPKDFMRRQ
IPYVEVAEEVSIDKIVSQVLCGQTALILEGFSSAIMIDLRTYPVRGPQEPETEKVLRGSRDGFVETIVFNTALIRRRIRD
PRLTFEMMSIGNVSKTDVVISFLDEVVDKKTLNLIKKKFENLDIQALTMSEQSLVESLSNASWYNPFPKVRYTERPDVAA
AHITEGKIVVIIDNSPSVIILPTTIFDFIQDVDDYYLPVITGNFIRLIRNFILISTIFITPLYLLLIQNAYRIPDYLKFL
LPVDGYKVPLIVQFLLLEVAVDGLKLASLNTPNALGMSLSVIGGLILGQFAVDTGWFLPQTILYMAIVTLGSFSQPSLEL
SYALKFWRTLLLILTSLFNVIGFFIGLIIGIVLIASNKTLTGDSYLYPLIPLDWKALKALIFRVRLVPKQKEE
>Mature_473_residues
MDLTSNFDKNINTLSKALRVGKSFDIIERSIIIGDKKATMYYIDGFVKDDVMELIMSDFFSLSKTEMNLIKSPKDFMRRQ
IPYVEVAEEVSIDKIVSQVLCGQTALILEGFSSAIMIDLRTYPVRGPQEPETEKVLRGSRDGFVETIVFNTALIRRRIRD
PRLTFEMMSIGNVSKTDVVISFLDEVVDKKTLNLIKKKFENLDIQALTMSEQSLVESLSNASWYNPFPKVRYTERPDVAA
AHITEGKIVVIIDNSPSVIILPTTIFDFIQDVDDYYLPVITGNFIRLIRNFILISTIFITPLYLLLIQNAYRIPDYLKFL
LPVDGYKVPLIVQFLLLEVAVDGLKLASLNTPNALGMSLSVIGGLILGQFAVDTGWFLPQTILYMAIVTLGSFSQPSLEL
SYALKFWRTLLLILTSLFNVIGFFIGLIIGIVLIASNKTLTGDSYLYPLIPLDWKALKALIFRVRLVPKQKEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 53491; Mature: 53491

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTSNFDKNINTLSKALRVGKSFDIIERSIIIGDKKATMYYIDGFVKDDVMELIMSDFF
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHEEECCCCEEEEEECCHHHHHHHHHHHHHHH
SLSKTEMNLIKSPKDFMRRQIPYVEVAEEVSIDKIVSQVLCGQTALILEGFSSAIMIDLR
HHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCEEEEEEE
TYPVRGPQEPETEKVLRGSRDGFVETIVFNTALIRRRIRDPRLTFEMMSIGNVSKTDVVI
ECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHH
SFLDEVVDKKTLNLIKKKFENLDIQALTMSEQSLVESLSNASWYNPFPKVRYTERPDVAA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEECCCCCCEE
AHITEGKIVVIIDNSPSVIILPTTIFDFIQDVDDYYLPVITGNFIRLIRNFILISTIFIT
EEECCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHH
PLYLLLIQNAYRIPDYLKFLLPVDGYKVPLIVQFLLLEVAVDGLKLASLNTPNALGMSLS
HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
VIGGLILGQFAVDTGWFLPQTILYMAIVTLGSFSQPSLELSYALKFWRTLLLILTSLFNV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGFFIGLIIGIVLIASNKTLTGDSYLYPLIPLDWKALKALIFRVRLVPKQKEE
HHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLTSNFDKNINTLSKALRVGKSFDIIERSIIIGDKKATMYYIDGFVKDDVMELIMSDFF
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHEEECCCCEEEEEECCHHHHHHHHHHHHHHH
SLSKTEMNLIKSPKDFMRRQIPYVEVAEEVSIDKIVSQVLCGQTALILEGFSSAIMIDLR
HHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCEEEEEEE
TYPVRGPQEPETEKVLRGSRDGFVETIVFNTALIRRRIRDPRLTFEMMSIGNVSKTDVVI
ECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHH
SFLDEVVDKKTLNLIKKKFENLDIQALTMSEQSLVESLSNASWYNPFPKVRYTERPDVAA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEECCCCCCEE
AHITEGKIVVIIDNSPSVIILPTTIFDFIQDVDDYYLPVITGNFIRLIRNFILISTIFIT
EEECCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHH
PLYLLLIQNAYRIPDYLKFLLPVDGYKVPLIVQFLLLEVAVDGLKLASLNTPNALGMSLS
HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
VIGGLILGQFAVDTGWFLPQTILYMAIVTLGSFSQPSLELSYALKFWRTLLLILTSLFNV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGFFIGLIIGIVLIASNKTLTGDSYLYPLIPLDWKALKALIFRVRLVPKQKEE
HHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]