| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18309871
Identifier: 18309871
GI number: 18309871
Start: 1092507
End: 1092926
Strand: Direct
Name: 18309871
Synonym: CPE0889
Alternate gene names: NA
Gene position: 1092507-1092926 (Clockwise)
Preceding gene: 18309870
Following gene: 18309872
Centisome position: 36.04
GC content: 26.19
Gene sequence:
>420_bases GTGGACCAAAGAAGTTTAGAGAAAAAGTGTAAGTTCAATAAAAGGGTTATTCTATTTACATTTTTACTTACAATTGCTAC ATTAATAGCAATTTGGATTTCTACATTTAAGTATTATTACAATGAAATTAAATGCAATAATGTGACTATGGAAAAGTTAC CCATAGGAAGCTTTCAAGAAGAGTATAAATCTCCAAACAAAAAATATACTATTAATTCTTATATATGTAGTTCTGGAGGA GTACCTGATTGGGCCGTAAGATGTGAAGTGGTTAATAATATAAGTGGAGAAGTAAGAAATATATATTGGGATTATAAGAT AAAATTAATTGATGTAAAATGGATTAATGATAATATAGTCTCAATAAATGGACATAAAATAGATGTTAAAAATGAGGTTT ATGATTGGAGAAAAATATAA
Upstream 100 bases:
>100_bases AAATATTTAATATAGTAATTTAAAAATAAACTAAAACTTGTATTAAAACAGGTTTTTGTTAAATTTTATAAATATATAGA CATTTTAAAGGAGCGATTAA
Downstream 100 bases:
>100_bases TTAAAATAAAAAAGACAAATACTTTTAGTATTTGTCTTTTTTAATCACATTCAATAATACGTAAATAACACAAAAGTGCA TTAAAAATGAAAAAATAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQEEYKSPNKKYTINSYICSSGG VPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIVSINGHKIDVKNEVYDWRKI
Sequences:
>Translated_139_residues MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQEEYKSPNKKYTINSYICSSGG VPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIVSINGHKIDVKNEVYDWRKI >Mature_139_residues MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQEEYKSPNKKYTINSYICSSGG VPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIVSINGHKIDVKNEVYDWRKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16475; Mature: 16475
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQE CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEECCCCCCHHH EYKSPNKKYTINSYICSSGGVPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIV HHCCCCCEEEEEEEEECCCCCCCHHHHEEEHHCCCCCEEEEEEEEEEEEEEEEEECCCEE SINGHKIDVKNEVYDWRKI EECCCEEEECCCCCCCCCC >Mature Secondary Structure MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQE CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEECCCCCCHHH EYKSPNKKYTINSYICSSGGVPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIV HHCCCCCEEEEEEEEECCCCCCCHHHHEEEHHCCCCCEEEEEEEEEEEEEEEEEECCCEE SINGHKIDVKNEVYDWRKI EECCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA