Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18309871

Identifier: 18309871

GI number: 18309871

Start: 1092507

End: 1092926

Strand: Direct

Name: 18309871

Synonym: CPE0889

Alternate gene names: NA

Gene position: 1092507-1092926 (Clockwise)

Preceding gene: 18309870

Following gene: 18309872

Centisome position: 36.04

GC content: 26.19

Gene sequence:

>420_bases
GTGGACCAAAGAAGTTTAGAGAAAAAGTGTAAGTTCAATAAAAGGGTTATTCTATTTACATTTTTACTTACAATTGCTAC
ATTAATAGCAATTTGGATTTCTACATTTAAGTATTATTACAATGAAATTAAATGCAATAATGTGACTATGGAAAAGTTAC
CCATAGGAAGCTTTCAAGAAGAGTATAAATCTCCAAACAAAAAATATACTATTAATTCTTATATATGTAGTTCTGGAGGA
GTACCTGATTGGGCCGTAAGATGTGAAGTGGTTAATAATATAAGTGGAGAAGTAAGAAATATATATTGGGATTATAAGAT
AAAATTAATTGATGTAAAATGGATTAATGATAATATAGTCTCAATAAATGGACATAAAATAGATGTTAAAAATGAGGTTT
ATGATTGGAGAAAAATATAA

Upstream 100 bases:

>100_bases
AAATATTTAATATAGTAATTTAAAAATAAACTAAAACTTGTATTAAAACAGGTTTTTGTTAAATTTTATAAATATATAGA
CATTTTAAAGGAGCGATTAA

Downstream 100 bases:

>100_bases
TTAAAATAAAAAAGACAAATACTTTTAGTATTTGTCTTTTTTAATCACATTCAATAATACGTAAATAACACAAAAGTGCA
TTAAAAATGAAAAAATAATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQEEYKSPNKKYTINSYICSSGG
VPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIVSINGHKIDVKNEVYDWRKI

Sequences:

>Translated_139_residues
MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQEEYKSPNKKYTINSYICSSGG
VPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIVSINGHKIDVKNEVYDWRKI
>Mature_139_residues
MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQEEYKSPNKKYTINSYICSSGG
VPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIVSINGHKIDVKNEVYDWRKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16475; Mature: 16475

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQE
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEECCCCCCHHH
EYKSPNKKYTINSYICSSGGVPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIV
HHCCCCCEEEEEEEEECCCCCCCHHHHEEEHHCCCCCEEEEEEEEEEEEEEEEEECCCEE
SINGHKIDVKNEVYDWRKI
EECCCEEEECCCCCCCCCC
>Mature Secondary Structure
MDQRSLEKKCKFNKRVILFTFLLTIATLIAIWISTFKYYYNEIKCNNVTMEKLPIGSFQE
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEECCCCCCHHH
EYKSPNKKYTINSYICSSGGVPDWAVRCEVVNNISGEVRNIYWDYKIKLIDVKWINDNIV
HHCCCCCEEEEEEEEECCCCCCCHHHHEEEHHCCCCCEEEEEEEEEEEEEEEEEECCCEE
SINGHKIDVKNEVYDWRKI
EECCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA