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The map label for this gene is sigW [H]

Identifier: 18309698

GI number: 18309698

Start: 890124

End: 890642

Strand: Direct

Name: sigW [H]

Synonym: CPE0716

Alternate gene names: 18309698

Gene position: 890124-890642 (Clockwise)

Preceding gene: 18309697

Following gene: 18309699

Centisome position: 29.36

GC content: 27.94

Gene sequence:

>519_bases
GTGGAGTTATTATCATTTTTAGAGCATAGAAAAACTTCAATGGTTTCTCAAGCAAAGAAAGGAGATAAGGATGCCTTTTT
AAGTCTTATAGATGAGAATAGATTAAGTATCTATAGGGTTGCTAGGGGAATTTTAAATAACAAGGAAGACATAGAAGATG
CACTTCAGAATACAATAATAAAATCTTATGAGAAGATAGGAACTTTAAAAAAGGATGAATTCTTTAAAACTTGGATAATA
AGGATTTTAATAAATGAGTGTAATTTGATATTAAGAAGAAATAAAAAGACCATATTTTTAGATAAGTTAGAAAATGAAAA
GTCCTATAGTGATGACTATGGGAATATTGAGTTAACATCTGTAGTTAATTCATTAAGCGAGGATTTAAGAATAACTACAG
TATTATATTATTTTGAAGATATGTCTACTAAAGAGATATCAGAAATGTTAAATATAGCTGAAGGAACAGTAAGATCAAGA
CTGGCTAGGGCAAGAGAAAAGCTTAGAGATTTTATATAA

Upstream 100 bases:

>100_bases
AAATTATAAAAAAATTATTTTTTTAGGGAGCATTTTTATTAATTAAACCATCTAATAAGTATAAAGCTTAGCTAAGTTAT
TAAAATTTAGGAGGAAAGTT

Downstream 100 bases:

>100_bases
CATAATTATATTAAAAATAGCTATTTAATAGATTAAACTAAATTTTAATCAACTTATTTTATGGAGGGTTAATTAATGAA
AAATAATGATGATTTATTTG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MELLSFLEHRKTSMVSQAKKGDKDAFLSLIDENRLSIYRVARGILNNKEDIEDALQNTIIKSYEKIGTLKKDEFFKTWII
RILINECNLILRRNKKTIFLDKLENEKSYSDDYGNIELTSVVNSLSEDLRITTVLYYFEDMSTKEISEMLNIAEGTVRSR
LARAREKLRDFI

Sequences:

>Translated_172_residues
MELLSFLEHRKTSMVSQAKKGDKDAFLSLIDENRLSIYRVARGILNNKEDIEDALQNTIIKSYEKIGTLKKDEFFKTWII
RILINECNLILRRNKKTIFLDKLENEKSYSDDYGNIELTSVVNSLSEDLRITTVLYYFEDMSTKEISEMLNIAEGTVRSR
LARAREKLRDFI
>Mature_172_residues
MELLSFLEHRKTSMVSQAKKGDKDAFLSLIDENRLSIYRVARGILNNKEDIEDALQNTIIKSYEKIGTLKKDEFFKTWII
RILINECNLILRRNKKTIFLDKLENEKSYSDDYGNIELTSVVNSLSEDLRITTVLYYFEDMSTKEISEMLNIAEGTVRSR
LARAREKLRDFI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=174, Percent_Identity=28.1609195402299, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20168; Mature: 20168

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLSFLEHRKTSMVSQAKKGDKDAFLSLIDENRLSIYRVARGILNNKEDIEDALQNTII
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
KSYEKIGTLKKDEFFKTWIIRILINECNLILRRNKKTIFLDKLENEKSYSDDYGNIELTS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHH
VVNSLSEDLRITTVLYYFEDMSTKEISEMLNIAEGTVRSRLARAREKLRDFI
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELLSFLEHRKTSMVSQAKKGDKDAFLSLIDENRLSIYRVARGILNNKEDIEDALQNTII
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
KSYEKIGTLKKDEFFKTWIIRILINECNLILRRNKKTIFLDKLENEKSYSDDYGNIELTS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHH
VVNSLSEDLRITTVLYYFEDMSTKEISEMLNIAEGTVRSRLARAREKLRDFI
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]