Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is rfbN [H]

Identifier: 18309597

GI number: 18309597

Start: 771521

End: 772435

Strand: Direct

Name: rfbN [H]

Synonym: CPE0615

Alternate gene names: 18309597

Gene position: 771521-772435 (Clockwise)

Preceding gene: 18309596

Following gene: 18309598

Centisome position: 25.45

GC content: 26.45

Gene sequence:

>915_bases
ATGAAGATATCTATAATTTGTCCATTGTATAATGCTGAAAATTATATAATGAGTTTACACAATAAAATATTAGAACAAGA
AAAACCAGAGGGTACAGAAGTCGAAGTTTCATATGTTTTAACTAGATGTAAGGATAAAACAGAAGAAATGTTAAAAAATA
TGAATTTACAATATACACTTATAGAACCAAAGGATTTTTCACATTCAAAAACTAGGGAGATGATGGCTTTTAAGTCAACA
GGAGATATTATAGTTTTTATATCACAAGATGTAATGATGAAGAATAACTTTTGGCTTAAAAATTTAGTACAACCTATTAT
AGATGGGGAGTGTGAAGCTTCATTTAGTAGACAACTTTGTACTAATAATACTATAGAAAAATATATAAGAGAAAAGAATT
ATCCTGAAGAATCAAGAGTGGTTTCTAAAAAGGATATTAATAAATATGGATTATTAACATTTTTCTATTCAGATGCATCA
TCAGCTGTTAAAACAAGTGTATATAAAGAGTTAAATGGATATGACAATAAAAGACTTTTAATAAATGAAGATATGTATTT
TGCTGAAAAGCTTATACAAGCTGGATATAGAATAAAGTATTGCTCAGATTCTGAAGTTTATCATTCTCATGTATTTACTC
TTAAATCATTGTATGAAAGATACTTTGATACTGGAGTTTTCTTTAGACAAAACTCACAGTTCCTAAATTATAAAGGGAAT
AAGAGTGGTAAAGATTTAGCTATTCATGTATTAAAAAGATCATTAGAAGATAAAAACTTTAAGGTTACATTAAATATATT
ACCTAATTTTGGAGCGAGATTTATTGGAAGTTTCTTAGGAAAGAAATATGAAAGTTTACCTAGAAGTTTTGTTATGGCTT
CTTCAATGAGTAAAAAGGTATATAGTCAAATTTAG

Upstream 100 bases:

>100_bases
AATGGATATGTACTATATAGATAATAGATCTTTATGGCTTGATATTAAAATAATATTTAAGACGGTTATATCAGTTATAA
AAAAAGAAGGAGCTGTATAG

Downstream 100 bases:

>100_bases
GATTAAGGTAGAAGGTGAGAAGATGAAAGGAATTATATTAGCTGGTGGAAGTGGGACAAGATTATATCCAGTAACAAAGG
CAATGTCAAAGCAAATGGTA

Product: rhamnosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKST
GDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDAS
SAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN
KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI

Sequences:

>Translated_304_residues
MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKST
GDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDAS
SAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN
KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI
>Mature_304_residues
MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKST
GDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDAS
SAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN
KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 35508; Mature: 35508

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTL
CEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEE
IEPKDFSHSKTREMMAFKSTGDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLC
ECCCCCCCHHHHHHHHEECCCCEEEEEECCEEECCCCCHHHHHHHHHCCCCCHHHHHHHH
TNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDASSAVKTSVYKELNGYDNKRLL
CCHHHHHHHHHCCCCHHHHCCCHHCCCHHEEEEEEECCHHHHHHHHHHHHHCCCCCCEEE
INEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN
EECCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCC
KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKV
CCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSQI
HHCC
>Mature Secondary Structure
MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTL
CEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEE
IEPKDFSHSKTREMMAFKSTGDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLC
ECCCCCCCHHHHHHHHEECCCCEEEEEECCEEECCCCCHHHHHHHHHCCCCCHHHHHHHH
TNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDASSAVKTSVYKELNGYDNKRLL
CCHHHHHHHHHCCCCHHHHCCCHHCCCHHEEEEEEECCHHHHHHHHHHHHHCCCCCCEEE
INEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN
EECCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCC
KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKV
CCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSQI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]