| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is rfbN [H]
Identifier: 18309597
GI number: 18309597
Start: 771521
End: 772435
Strand: Direct
Name: rfbN [H]
Synonym: CPE0615
Alternate gene names: 18309597
Gene position: 771521-772435 (Clockwise)
Preceding gene: 18309596
Following gene: 18309598
Centisome position: 25.45
GC content: 26.45
Gene sequence:
>915_bases ATGAAGATATCTATAATTTGTCCATTGTATAATGCTGAAAATTATATAATGAGTTTACACAATAAAATATTAGAACAAGA AAAACCAGAGGGTACAGAAGTCGAAGTTTCATATGTTTTAACTAGATGTAAGGATAAAACAGAAGAAATGTTAAAAAATA TGAATTTACAATATACACTTATAGAACCAAAGGATTTTTCACATTCAAAAACTAGGGAGATGATGGCTTTTAAGTCAACA GGAGATATTATAGTTTTTATATCACAAGATGTAATGATGAAGAATAACTTTTGGCTTAAAAATTTAGTACAACCTATTAT AGATGGGGAGTGTGAAGCTTCATTTAGTAGACAACTTTGTACTAATAATACTATAGAAAAATATATAAGAGAAAAGAATT ATCCTGAAGAATCAAGAGTGGTTTCTAAAAAGGATATTAATAAATATGGATTATTAACATTTTTCTATTCAGATGCATCA TCAGCTGTTAAAACAAGTGTATATAAAGAGTTAAATGGATATGACAATAAAAGACTTTTAATAAATGAAGATATGTATTT TGCTGAAAAGCTTATACAAGCTGGATATAGAATAAAGTATTGCTCAGATTCTGAAGTTTATCATTCTCATGTATTTACTC TTAAATCATTGTATGAAAGATACTTTGATACTGGAGTTTTCTTTAGACAAAACTCACAGTTCCTAAATTATAAAGGGAAT AAGAGTGGTAAAGATTTAGCTATTCATGTATTAAAAAGATCATTAGAAGATAAAAACTTTAAGGTTACATTAAATATATT ACCTAATTTTGGAGCGAGATTTATTGGAAGTTTCTTAGGAAAGAAATATGAAAGTTTACCTAGAAGTTTTGTTATGGCTT CTTCAATGAGTAAAAAGGTATATAGTCAAATTTAG
Upstream 100 bases:
>100_bases AATGGATATGTACTATATAGATAATAGATCTTTATGGCTTGATATTAAAATAATATTTAAGACGGTTATATCAGTTATAA AAAAAGAAGGAGCTGTATAG
Downstream 100 bases:
>100_bases GATTAAGGTAGAAGGTGAGAAGATGAAAGGAATTATATTAGCTGGTGGAAGTGGGACAAGATTATATCCAGTAACAAAGG CAATGTCAAAGCAAATGGTA
Product: rhamnosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKST GDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDAS SAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI
Sequences:
>Translated_304_residues MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKST GDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDAS SAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI >Mature_304_residues MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKST GDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDAS SAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI
Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 35508; Mature: 35508
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTL CEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEE IEPKDFSHSKTREMMAFKSTGDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLC ECCCCCCCHHHHHHHHEECCCCEEEEEECCEEECCCCCHHHHHHHHHCCCCCHHHHHHHH TNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDASSAVKTSVYKELNGYDNKRLL CCHHHHHHHHHCCCCHHHHCCCHHCCCHHEEEEEEECCHHHHHHHHHHHHHCCCCCCEEE INEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN EECCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCC KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKV CCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSQI HHCC >Mature Secondary Structure MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTL CEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEE IEPKDFSHSKTREMMAFKSTGDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLC ECCCCCCCHHHHHHHHEECCCCEEEEEECCEEECCCCCHHHHHHHHHCCCCCHHHHHHHH TNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDASSAVKTSVYKELNGYDNKRLL CCHHHHHHHHHCCCCHHHHCCCHHCCCHHEEEEEEECCHHHHHHHHHHHHHCCCCCCEEE INEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGN EECCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCC KSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKV CCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSQI HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1710759; 11677609 [H]