| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is artQ [H]
Identifier: 18309583
GI number: 18309583
Start: 751519
End: 752190
Strand: Direct
Name: artQ [H]
Synonym: CPE0601
Alternate gene names: 18309583
Gene position: 751519-752190 (Clockwise)
Preceding gene: 18309582
Following gene: 18309584
Centisome position: 24.79
GC content: 30.51
Gene sequence:
>672_bases ATGGGGGGATTAGACTTCAGCTTTTTAAAAGAGTATTTTCCAGTATTTTTGGAAGGTGCTAAATGGACATTAATAATTTC AGCAATAACAGTTATTTTAGGAGCTTTATTAGGAACAATTTTATGCTTTATGAAACGTTCCAAATTTTCAATATTTAAAG TTAAAATTTTAAGGGTTATTTCTACTGCTTATGTAGAAGTTATAAGAGGAACACCTCTTTTATTACAAATATATATAGTT TATTTTGGATTACCTTCCTTTGGAATTCAATTAGAGGTTTTACTTTCATGTATTATTGCTATTTCCTTAAATTCAGCAGC TTATGTTTCAGAAATAATAAGAGCAGGGATAGATGCTGTTGATAAGGGACAATTAGAAGCCGCTAGAAGTTTAGGTATGA CAGAAGGAATGGCTATGAGACTTATAATACTTCCTCAAGCTATAAAAAATATACTCCCTGCTATAGGAAATGAGTTTGTT GCCATAATAAAGGAATCATCTATGGCATCTACAATTGGAGTAGCAGAACTTATGTATTCATCAAAAATAGTTACAGGGGC TACTTATAAAGGTTTTGAACCACTTATTGTTATAGCAATGTTTTATTTTGTTATGACCTTTAGTTTAGGAAGAGTTATGT CTTATGTAGAAAAGAGGTTGAGTAAATCATGA
Upstream 100 bases:
>100_bases AAATGGAAAGATAGATCAATTTACAAATGATGCTATTGAATTAGTTCCATATCAAAAGAAAGAAGAATAAAATTAATTTT AATAATTAGGGGGCAATACT
Downstream 100 bases:
>100_bases TAAATGTTAGAAATTTATATAAAAGTTTTGGTAAAAATGAGGTTTTAAAAGATATAAATGAAACGATAAAAAAGGGAGAA GTAGTAGTTATAATAGGGCC
Product: amino acid ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MGGLDFSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVISTAYVEVIRGTPLLLQIYIV YFGLPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAVDKGQLEAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFV AIIKESSMASTIGVAELMYSSKIVTGATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRLSKS
Sequences:
>Translated_223_residues MGGLDFSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVISTAYVEVIRGTPLLLQIYIV YFGLPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAVDKGQLEAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFV AIIKESSMASTIGVAELMYSSKIVTGATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRLSKS >Mature_222_residues GGLDFSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVISTAYVEVIRGTPLLLQIYIVY FGLPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAVDKGQLEAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFVA IIKESSMASTIGVAELMYSSKIVTGATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRLSKS
Specific function: Part of a binding-protein-dependent transport system for arginine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788226, Length=213, Percent_Identity=38.9671361502347, Blast_Score=164, Evalue=5e-42, Organism=Escherichia coli, GI1787030, Length=219, Percent_Identity=31.5068493150685, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1786873, Length=227, Percent_Identity=31.2775330396476, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=33.0143540669856, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1787086, Length=190, Percent_Identity=31.0526315789474, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=30.2884615384615, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=28.4403669724771, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786874, Length=197, Percent_Identity=27.9187817258883, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787087, Length=238, Percent_Identity=24.3697478991597, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI48994930, Length=129, Percent_Identity=32.5581395348837, Blast_Score=84, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 24482; Mature: 24351
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGLDFSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVI CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH STAYVEVIRGTPLLLQIYIVYFGLPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAV HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC DKGQLEAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFVAIIKESSMASTIGVAELMYS CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH SKIVTGATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRLSKS HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GGLDFSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVI CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH STAYVEVIRGTPLLLQIYIVYFGLPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAV HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC DKGQLEAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFVAIIKESSMASTIGVAELMYS CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH SKIVTGATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRLSKS HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]