Click here to switch to the map view.

The map label for this gene is ydjZ [H]

Identifier: 18309561

GI number: 18309561

Start: 720118

End: 720813

Strand: Direct

Name: ydjZ [H]

Synonym: CPE0579

Alternate gene names: 18309561

Gene position: 720118-720813 (Clockwise)

Preceding gene: 18309560

Following gene: 18309562

Centisome position: 23.76

GC content: 31.18

Gene sequence:

>696_bases
TTGAAGAAAATAGTTAAACCTTGGGTTGCTACCTTAATTATTTTAATAGTAGCTTTTTTGGTGTATTTTTTTGTTCCAAC
TGCTAATAGTAAAATAAATCAGATGATATTTTACTTAAGTAGTATGAATTTAGATATGATAAAGGAATATATATTATCTT
TTGGAATATGGGCACCTATAACATCATTTTTATTAATGGTACTTCAATCTGTAATAGCACCAATACCAGCTTTTTTAATA
ACCTTAAGTAATGCAGCTATATTTGGATGGGTTAAGGGTGCTATATTATCATGGAGTAGTGCCATGGCTGGGGCAGCACT
ATGTTTTTATATAGCAAGAGGCTTAGGGAGAGATGCCGTTGAAAAGTTAACTAGTAAATTTGCCTTAAAGGATATAGATG
GTTTCTTTGAAAAGTATGGTAAACATACTATACTAATAGCAAGATTGCTACCTTTTATATCTTTTGACTTAGTTAGTTAT
GCTGCAGGACTTACATCAATGAATTTTTGGTCATTTTTCATTGCTACAGGTATTGGTCAATTACCTGCCACAATAGTATA
TTCTTATGTTGGTGGTATGCTTACTGGGGGAGCACAATTACTTATGAGTGGACTTTTAATTTTATTTGCTTTAAGTATAG
CAATATATGTGGGGAAAAAAGTTTGGAATGAGAAAAGAGGTAAAAATGACAAATAA

Upstream 100 bases:

>100_bases
TGCTATATAATTAATTAGTGACTTTAAACTAATAATTTAAGGTTTGCCAATTAGACTTAAAACTTAATAATGAAATTTTG
ATTTAAATGGAGGTAATAAT

Downstream 100 bases:

>100_bases
GGAACTAAAGAAAAATTTAGAGGACTGTGTTAATTGTGGACTTTGCTACAAGGTATGTCCAATGATGAATACTTTTGGAG
AGAGTCCTAAAAATATATTA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKKIVKPWVATLIILIVAFLVYFFVPTANSKINQMIFYLSSMNLDMIKEYILSFGIWAPITSFLLMVLQSVIAPIPAFLI
TLSNAAIFGWVKGAILSWSSAMAGAALCFYIARGLGRDAVEKLTSKFALKDIDGFFEKYGKHTILIARLLPFISFDLVSY
AAGLTSMNFWSFFIATGIGQLPATIVYSYVGGMLTGGAQLLMSGLLILFALSIAIYVGKKVWNEKRGKNDK

Sequences:

>Translated_231_residues
MKKIVKPWVATLIILIVAFLVYFFVPTANSKINQMIFYLSSMNLDMIKEYILSFGIWAPITSFLLMVLQSVIAPIPAFLI
TLSNAAIFGWVKGAILSWSSAMAGAALCFYIARGLGRDAVEKLTSKFALKDIDGFFEKYGKHTILIARLLPFISFDLVSY
AAGLTSMNFWSFFIATGIGQLPATIVYSYVGGMLTGGAQLLMSGLLILFALSIAIYVGKKVWNEKRGKNDK
>Mature_231_residues
MKKIVKPWVATLIILIVAFLVYFFVPTANSKINQMIFYLSSMNLDMIKEYILSFGIWAPITSFLLMVLQSVIAPIPAFLI
TLSNAAIFGWVKGAILSWSSAMAGAALCFYIARGLGRDAVEKLTSKFALKDIDGFFEKYGKHTILIARLLPFISFDLVSY
AAGLTSMNFWSFFIATGIGQLPATIVYSYVGGMLTGGAQLLMSGLLILFALSIAIYVGKKVWNEKRGKNDK

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI1788049, Length=220, Percent_Identity=55.4545454545455, Blast_Score=247, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25471; Mature: 25471

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVKPWVATLIILIVAFLVYFFVPTANSKINQMIFYLSSMNLDMIKEYILSFGIWAPI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH
TSFLLMVLQSVIAPIPAFLITLSNAAIFGWVKGAILSWSSAMAGAALCFYIARGLGRDAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EKLTSKFALKDIDGFFEKYGKHTILIARLLPFISFDLVSYAAGLTSMNFWSFFIATGIGQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LPATIVYSYVGGMLTGGAQLLMSGLLILFALSIAIYVGKKVWNEKRGKNDK
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKIVKPWVATLIILIVAFLVYFFVPTANSKINQMIFYLSSMNLDMIKEYILSFGIWAPI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH
TSFLLMVLQSVIAPIPAFLITLSNAAIFGWVKGAILSWSSAMAGAALCFYIARGLGRDAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EKLTSKFALKDIDGFFEKYGKHTILIARLLPFISFDLVSYAAGLTSMNFWSFFIATGIGQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LPATIVYSYVGGMLTGGAQLLMSGLLILFALSIAIYVGKKVWNEKRGKNDK
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]