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The map label for this gene is rnfB [H]

Identifier: 182682201

GI number: 182682201

Start: 1860341

End: 1860760

Strand: Direct

Name: rnfB [H]

Synonym: XfasM23_1680

Alternate gene names: 182682201

Gene position: 1860341-1860760 (Clockwise)

Preceding gene: 182682199

Following gene: 182682214

Centisome position: 73.37

GC content: 62.14

Gene sequence:

>420_bases
ATGTCCAGCCCTCCCCCCCTCACCCTCGTCGAACGCATTGATCGCTTGCTGCCACAAACACAATGCGGCCAATGCGGCTT
TCAAGGCTGCCTCCCGTATGCGCAAGCGATGGCACGTGGCGAAGCCAACATCGACCGCTGCCCTCCCGGCGGAGACGCTG
GCGCACGCGCCCTGGCACACCTGCTTGGCTTACCACCACGCCCCTACGACCGCAACCGCGGCACCCAACAGCAACCGCAG
GTCGCCTGGATCGTCGAAGCGGACTGTATCGGCTGCACAAAATGCATCCAGGCTTGTCCCGTCGATGCAATTATCGGTGG
CGCTAAACACATGCATACGGTAATCGCTGCACTTTGCACCGGCTGTGAACTCTGCGTGCCCGCGTGCCCAGTGGACTGCA
TCGAACTACACCCCAGCTGA

Upstream 100 bases:

>100_bases
ACGCACCACCACTCTACTCAAACAAAGAAAACAGCCTGCCCGACCATCCACCCTACCCTGCTGCTCACTCACCTCATACC
CGTGCAACCTGACACACACC

Downstream 100 bases:

>100_bases
ACACAGCAAGCCCAACCGCATTGATTGGTGATGCACCTCACGCAAGCGGCACACTGAGCAAAGCGACTCAAAGCAAATCT
AATGATTCAAACGTGGCTCT

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSSPPPLTLVERIDRLLPQTQCGQCGFQGCLPYAQAMARGEANIDRCPPGGDAGARALAHLLGLPPRPYDRNRGTQQQPQ
VAWIVEADCIGCTKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIELHPS

Sequences:

>Translated_139_residues
MSSPPPLTLVERIDRLLPQTQCGQCGFQGCLPYAQAMARGEANIDRCPPGGDAGARALAHLLGLPPRPYDRNRGTQQQPQ
VAWIVEADCIGCTKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIELHPS
>Mature_138_residues
SSPPPLTLVERIDRLLPQTQCGQCGFQGCLPYAQAMARGEANIDRCPPGGDAGARALAHLLGLPPRPYDRNRGTQQQPQV
AWIVEADCIGCTKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIELHPS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=131, Percent_Identity=54.1984732824427, Blast_Score=141, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 14701; Mature: 14570

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
11.5 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
10.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPPPLTLVERIDRLLPQTQCGQCGFQGCLPYAQAMARGEANIDRCPPGGDAGARALAH
CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LLGLPPRPYDRNRGTQQQPQVAWIVEADCIGCTKCIQACPVDAIIGGAKHMHTVIAALCT
HHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHC
GCELCVPACPVDCIELHPS
CCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSPPPLTLVERIDRLLPQTQCGQCGFQGCLPYAQAMARGEANIDRCPPGGDAGARALAH
CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LLGLPPRPYDRNRGTQQQPQVAWIVEADCIGCTKCIQACPVDAIIGGAKHMHTVIAALCT
HHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHC
GCELCVPACPVDCIELHPS
CCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA