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The map label for this gene is ybbN [H]

Identifier: 182681842

GI number: 182681842

Start: 1439530

End: 1440390

Strand: Reverse

Name: ybbN [H]

Synonym: XfasM23_1307

Alternate gene names: 182681842

Gene position: 1440390-1439530 (Counterclockwise)

Preceding gene: 182681849

Following gene: 182681833

Centisome position: 56.8

GC content: 52.5

Gene sequence:

>861_bases
ATGTCCGATAAATCCCATGTATTTGATGTGACTGATGCGGATTTTGAGACCGCAGTGTTGAAGAGGTCTTTAGAGACTCC
TGTATTGGTCGATTTTTGGGCGCCTTGGTGTGCTCCGTGCCGCTCGCTGATTCCGATTTTGGAGAAGTTGGTCGCCGAAT
ATCGTGGTGGGTTTGAGCTGGCGAAGATCAATGTGGATCAGGAGCAGCAAGTGGCTGCGGCGTTGCAGGTCCGCTCGGTT
CCAATGGTGTATCTGGTCAAGGATGGGCAATTGGTCGATGGTTTTCCAGGTGCCAAGCCTGAAACTCAGGTGCGTGAGTT
TTTGACGAAACATGGGATTCTTCCCGCTCGGTCCGCTGCGTTCAGAGAGGACACGCCCGCCATTCCATTGGATCCAGAGG
CTGAGGTTGAACGGTTGCGTCAGGCACTGGTTGCTGAGCCAGAGAATAATGATCTGAAGCTTGATCTTGCGTTGGCGTTG
CTGAAGACGAATGGCGCTGATGAGGCGGCGGGTCTCATTGATGCGTTGCCTGCGAAACTGGCTACAGATGATCGGATGTT
ACGGGCTAAGGCGTGGCTCCGTTTTATTGAGGTATTGAATGGTGCGCCTAGTCTGGATGTGCTCCAGGGGGCGTGTGCGG
CGGACGCATCGGATTTTGATCAACGTCACTTGCTTGGGGTGCATTTATTGCTTGATGGGCAGTGTGAGGCGGCGTTGGAG
CATTTTTTGGAGATGCTGCGCCAGAATCGCGACTTCAAGGATGGGTTGCCACGTAAAGCGTTGATTGATGCGTTTTATTT
GATCGAAGACAAAGAGTTGGTGGGGCGTTATCGCCGCAAGATGTCAGCATTGTTGTTTTGA

Upstream 100 bases:

>100_bases
TTGTCGTGTGTGTCCGTCATCAGGTGAACCTCTGACCTTGTATCGGTCTGATGTGTCACCATTAATTCATCATCATCAAT
TGATAGAAGAGTCTTTGGTT

Downstream 100 bases:

>100_bases
TCGTTATTGATGATGCATCTCTCAGTGCGGCAGGCGGTACTTGGTGTCCGCGCTGTAAGGGTTGCTTTTTCTTTTTTATG
TGAGGGTGAGAATTAATCTG

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSDKSHVFDVTDADFETAVLKRSLETPVLVDFWAPWCAPCRSLIPILEKLVAEYRGGFELAKINVDQEQQVAAALQVRSV
PMVYLVKDGQLVDGFPGAKPETQVREFLTKHGILPARSAAFREDTPAIPLDPEAEVERLRQALVAEPENNDLKLDLALAL
LKTNGADEAAGLIDALPAKLATDDRMLRAKAWLRFIEVLNGAPSLDVLQGACAADASDFDQRHLLGVHLLLDGQCEAALE
HFLEMLRQNRDFKDGLPRKALIDAFYLIEDKELVGRYRRKMSALLF

Sequences:

>Translated_286_residues
MSDKSHVFDVTDADFETAVLKRSLETPVLVDFWAPWCAPCRSLIPILEKLVAEYRGGFELAKINVDQEQQVAAALQVRSV
PMVYLVKDGQLVDGFPGAKPETQVREFLTKHGILPARSAAFREDTPAIPLDPEAEVERLRQALVAEPENNDLKLDLALAL
LKTNGADEAAGLIDALPAKLATDDRMLRAKAWLRFIEVLNGAPSLDVLQGACAADASDFDQRHLLGVHLLLDGQCEAALE
HFLEMLRQNRDFKDGLPRKALIDAFYLIEDKELVGRYRRKMSALLF
>Mature_285_residues
SDKSHVFDVTDADFETAVLKRSLETPVLVDFWAPWCAPCRSLIPILEKLVAEYRGGFELAKINVDQEQQVAAALQVRSVP
MVYLVKDGQLVDGFPGAKPETQVREFLTKHGILPARSAAFREDTPAIPLDPEAEVERLRQALVAEPENNDLKLDLALALL
KTNGADEAAGLIDALPAKLATDDRMLRAKAWLRFIEVLNGAPSLDVLQGACAADASDFDQRHLLGVHLLLDGQCEAALEH
FLEMLRQNRDFKDGLPRKALIDAFYLIEDKELVGRYRRKMSALLF

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=105, Percent_Identity=42.8571428571429, Blast_Score=85, Evalue=8e-17,
Organism=Escherichia coli, GI87081747, Length=295, Percent_Identity=32.2033898305085, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87082331, Length=108, Percent_Identity=40.7407407407407, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788936, Length=84, Percent_Identity=38.0952380952381, Blast_Score=85, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI212646193, Length=109, Percent_Identity=38.5321100917431, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI28573567, Length=110, Percent_Identity=36.3636363636364, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24639826, Length=110, Percent_Identity=29.0909090909091, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31815; Mature: 31684

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKSHVFDVTDADFETAVLKRSLETPVLVDFWAPWCAPCRSLIPILEKLVAEYRGGFEL
CCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEE
AKINVDQEQQVAAALQVRSVPMVYLVKDGQLVDGFPGAKPETQVREFLTKHGILPARSAA
EEECCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCHHHHHHHHHHCCCCCCCHHH
FREDTPAIPLDPEAEVERLRQALVAEPENNDLKLDLALALLKTNGADEAAGLIDALPAKL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
ATDDRMLRAKAWLRFIEVLNGAPSLDVLQGACAADASDFDQRHLLGVHLLLDGQCEAALE
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHEEEEEEECCCHHHHHH
HFLEMLRQNRDFKDGLPRKALIDAFYLIEDKELVGRYRRKMSALLF
HHHHHHHCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDKSHVFDVTDADFETAVLKRSLETPVLVDFWAPWCAPCRSLIPILEKLVAEYRGGFEL
CCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEE
AKINVDQEQQVAAALQVRSVPMVYLVKDGQLVDGFPGAKPETQVREFLTKHGILPARSAA
EEECCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCHHHHHHHHHHCCCCCCCHHH
FREDTPAIPLDPEAEVERLRQALVAEPENNDLKLDLALALLKTNGADEAAGLIDALPAKL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
ATDDRMLRAKAWLRFIEVLNGAPSLDVLQGACAADASDFDQRHLLGVHLLLDGQCEAALE
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHEEEEEEECCCHHHHHH
HFLEMLRQNRDFKDGLPRKALIDAFYLIEDKELVGRYRRKMSALLF
HHHHHHHCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]