Click here to switch to the map view.

The map label for this gene is ybaB [C]

Identifier: 182681664

GI number: 182681664

Start: 1270653

End: 1270976

Strand: Reverse

Name: ybaB [C]

Synonym: XfasM23_1122

Alternate gene names: 182681664

Gene position: 1270976-1270653 (Counterclockwise)

Preceding gene: 182681665

Following gene: 182681663

Centisome position: 50.12

GC content: 49.07

Gene sequence:

>324_bases
ATGATGCGAGGCAATATTGCCCAATTGATGCAGCAAGCACAGAAGATGCAGGAGAATCTGCAGCGTGCCCAAGAAGAATT
AGCCAAGTTGGAGGTCACTGGTAGCGCAGGTGGTAGCATGGTGAGCGTGATCCTCAGCGGTACCAAAGAGTGTCGCAAAG
TACGTATTGACCCCAGCATATTGAACGATCAGGAAATGATTGAAGATTTGATCGCGGCGGCCTTTAATGATGCCTCCAAC
AAGGTAGATGCTGAATCTAAGGAAAGGATGGGATCAGCCACTCTGGGTATGTCGCTTCCGCCCGGTTTTAAGTTACCGTT
CTAA

Upstream 100 bases:

>100_bases
CGAAGAAGCCTTCATGAGCGATCATGTGGTACAGCATCTGATCTATCAGCAGGCTGCCAAAGTTGTTACCGATTCCATAC
GCCCTTACGATGAGTAATGA

Downstream 100 bases:

>100_bases
GCGTATTTGGAAGGGTGTGGGGCTGATGCTTTGTGTAGGAAGGCATAGCATGGTTTGCGATGTTTTATCGCAAACCATTC
TTGTCCTTTTTGTATCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MMRGNIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGSMVSVILSGTKECRKVRIDPSILNDQEMIEDLIAAAFNDASN
KVDAESKERMGSATLGMSLPPGFKLPF

Sequences:

>Translated_107_residues
MMRGNIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGSMVSVILSGTKECRKVRIDPSILNDQEMIEDLIAAAFNDASN
KVDAESKERMGSATLGMSLPPGFKLPF
>Mature_107_residues
MMRGNIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGSMVSVILSGTKECRKVRIDPSILNDQEMIEDLIAAAFNDASN
KVDAESKERMGSATLGMSLPPGFKLPF

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family

Homologues:

Organism=Escherichia coli, GI1786677, Length=106, Percent_Identity=54.7169811320755, Blast_Score=131, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1122_XYLF2 (B2I5A7)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001829824.1
- ProteinModelPortal:   B2I5A7
- SMR:   B2I5A7
- GeneID:   6203962
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1122
- HOGENOM:   HBG734215
- OMA:   MLQDLIL
- ProtClustDB:   PRK00153
- HAMAP:   MF_00274
- InterPro:   IPR004401
- Gene3D:   G3DSA:3.30.1310.10
- PIRSF:   PIRSF004555
- TIGRFAMs:   TIGR00103

Pfam domain/function: PF02575 DUF149; SSF82607 CHP00103

EC number: NA

Molecular weight: Translated: 11644; Mature: 11644

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.5 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
7.5 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRGNIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGSMVSVILSGTKECRKVRIDPSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHCCCCHHH
LNDQEMIEDLIAAAFNDASNKVDAESKERMGSATLGMSLPPGFKLPF
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMRGNIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGSMVSVILSGTKECRKVRIDPSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHCCCCHHH
LNDQEMIEDLIAAAFNDASNKVDAESKERMGSATLGMSLPPGFKLPF
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA