| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681561
Identifier: 182681561
GI number: 182681561
Start: 1174797
End: 1175438
Strand: Reverse
Name: 182681561
Synonym: XfasM23_1019
Alternate gene names: NA
Gene position: 1175438-1174797 (Counterclockwise)
Preceding gene: 182681562
Following gene: 182681560
Centisome position: 46.36
GC content: 58.72
Gene sequence:
>642_bases ATGAGTCTGGATGACTGGAATAACGCCTCCCTCAGTGCCGTACTGCAACGCAGTACCGAAGCGCTGGCCCAGCGCCTGCG TGTGGCCTTGCCTGGGCAGATCGTCCGCTTTAACCCAGTCACCCAAACGGCGACCGTACAGCCGTTGATCCAGCAGAAGA TGAACGATGCCTCCCTTCAACCCTTACCGGTACTCCAGGATGTGCCGGTATCCTTCCCGCGGGGCGGCGGCTTTGTGATG ACCTTCCCCGTGGCTCCTGGGGATGAATGCGAACTCATCTTCCAAGATCGCTGCATTGATGCCTGGTTCCAGTCTGGCCG TGCGTCCGAGCCTGTGGACTATCGCCTGCATGACCTGTCTGATGCCGTTGCCTGCGTGGGAATTGCTTCCTTACCCAATG TCATTCCGAGGTTTGAAATGGACGGCGTGGTACTGCGCACCCTGGATGGCCGCGCCTCATTCAAACTGGATACCGCAGGT GTACTTACACTGCGTGGAACGAAGCTGGTTCTTGATCTTCCCGTGGAATTCACCCAGGGGCTCCGTGGTCATGGCGACGT CGTATCAAACAACATCCGCCTGGAGACACACACCCACGACAACGTGGAGAACGGCCCAGGACAGACAGGCCCGGCCCAAT GA
Upstream 100 bases:
>100_bases AAATCACCTCACTGCATGACATGGGCGATGTCATGGCCGAAGCCTGGTTCAGTACGGTGACTTGTGTGGGCGGTGATTTT CAGAAAGTGAGGCCGTCTGT
Downstream 100 bases:
>100_bases GAGTGCGGCGCTTGGACAGCCAAGGGGATTGGACCTTCGGCAACGGGCGCGGCAACTATGCTGCCGCCAGCGATTGCCTG GCACAGCGCGTAAAAACACG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Phage Protein
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSLDDWNNASLSAVLQRSTEALAQRLRVALPGQIVRFNPVTQTATVQPLIQQKMNDASLQPLPVLQDVPVSFPRGGGFVM TFPVAPGDECELIFQDRCIDAWFQSGRASEPVDYRLHDLSDAVACVGIASLPNVIPRFEMDGVVLRTLDGRASFKLDTAG VLTLRGTKLVLDLPVEFTQGLRGHGDVVSNNIRLETHTHDNVENGPGQTGPAQ
Sequences:
>Translated_213_residues MSLDDWNNASLSAVLQRSTEALAQRLRVALPGQIVRFNPVTQTATVQPLIQQKMNDASLQPLPVLQDVPVSFPRGGGFVM TFPVAPGDECELIFQDRCIDAWFQSGRASEPVDYRLHDLSDAVACVGIASLPNVIPRFEMDGVVLRTLDGRASFKLDTAG VLTLRGTKLVLDLPVEFTQGLRGHGDVVSNNIRLETHTHDNVENGPGQTGPAQ >Mature_212_residues SLDDWNNASLSAVLQRSTEALAQRLRVALPGQIVRFNPVTQTATVQPLIQQKMNDASLQPLPVLQDVPVSFPRGGGFVMT FPVAPGDECELIFQDRCIDAWFQSGRASEPVDYRLHDLSDAVACVGIASLPNVIPRFEMDGVVLRTLDGRASFKLDTAGV LTLRGTKLVLDLPVEFTQGLRGHGDVVSNNIRLETHTHDNVENGPGQTGPAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23140; Mature: 23008
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDDWNNASLSAVLQRSTEALAQRLRVALPGQIVRFNPVTQTATVQPLIQQKMNDASLQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC PLPVLQDVPVSFPRGGGFVMTFPVAPGDECELIFQDRCIDAWFQSGRASEPVDYRLHDLS CCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHH DAVACVGIASLPNVIPRFEMDGVVLRTLDGRASFKLDTAGVLTLRGTKLVLDLPVEFTQG HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCEEEEECCHHHHCC LRGHGDVVSNNIRLETHTHDNVENGPGQTGPAQ CCCCCCEECCCEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure SLDDWNNASLSAVLQRSTEALAQRLRVALPGQIVRFNPVTQTATVQPLIQQKMNDASLQ CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC PLPVLQDVPVSFPRGGGFVMTFPVAPGDECELIFQDRCIDAWFQSGRASEPVDYRLHDLS CCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHH DAVACVGIASLPNVIPRFEMDGVVLRTLDGRASFKLDTAGVLTLRGTKLVLDLPVEFTQG HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCEEEEECCHHHHCC LRGHGDVVSNNIRLETHTHDNVENGPGQTGPAQ CCCCCCEECCCEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA