| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681433
Identifier: 182681433
GI number: 182681433
Start: 1043788
End: 1046310
Strand: Direct
Name: 182681433
Synonym: XfasM23_0884
Alternate gene names: NA
Gene position: 1043788-1046310 (Clockwise)
Preceding gene: 182681432
Following gene: 182681434
Centisome position: 41.16
GC content: 57.11
Gene sequence:
>2523_bases ATGCCTGCCACGCTTAAAGAATTTCAGGAAACCTTGTGTGCGGGGATCGTTGCCCGTTTTAACCAAGTACGTCGTTTGTA CGAACAGCTTGCCGGTGCGCCACCGGAGCAATGGACTCAGGCACGTTGCAACGATGCCGTAACCGTGCTGTGCGCCCCCA CCGGTGCGGGTAAAACATTGATCGCGGTGGAAACAATGCGCCGTGTGTCCGCCACAGGTGAGCGCGTTCTGTGGTTTTGG TTTGCGCCGTTCTCTGGACTTGTGGAGCAGTCGCGTCAGGTCATTGCGGCGCAGGCGCCGGAACTGGATGTGTTCGATCT ACAGTCAGATCGTTGTTGGGAAACGGTGCGTAGTGGTGGTGTTTTTGTCGTCACCTGGGCCGCTGTGGCGGTGCGCAATA CGGAAGGCCGTCGGGCGCGAACCCACGGCGACAGCGGTATGTCACTGGATGTGTTGCTTGCGTTGGCGCGTGAAGAGGGC GTCCGCATTGGGTGTGTGGTGGATGAGGCGCACCATACGGCGCTGTCTGGCCATCAAGCGCGTCTCTTTTTTCAGTCTGT TCTGGCGCCAGATTACGCGCTGCTGATGACGGCCACGCCGCGTGATGCAGATGTGATGGCATTTGAGCGTGCGACGGGTT ACATGGTAGGCCAAGCGGCAGAGTGGGCGATGGTCAGCCGTTTCGATGCGGTGCAGGCTGGGTTGCTCAAATACGGCGTG CGTATGGTGCGCTTCATTGCGCAAGATGGGGATGCGGCACAATTGATTGACTTTGAACACCTGGCCTTGCGTCAGTGTGC CGAAACACATCGGATGATCAAGCGTCTACTGGCTGATGCTGGTGTGGCGTTGACGCCGCTGATGTTGGTGCAGGTGCCGG ATGGCCGTGCGGCACAAGACGAGGCACGGCGTTTTTTGACGGAGCAATTGCACTTTGATCACGAAGCAGTACGGATACAT ACGGCCGATGAACCGGATCCAGCGTTGTTATCCCTGGCCAACGATCCTACTGTGGAAGTGCTGATTTTTAAGATGGCGGT GGCCTTGGGATTTGATGCGCCACGTGCGTTTACCTTGGCAGCATTGCGTGGTGCTCGGGACCCTGCATTTGGTATCCAGG TGATTGGCCGTATCGTGCGCAAGCATGCGTTGCTGCAAGGGCGCGTGACTCTTCCGGAGTCGTTGGATTACGGATACGTT TTCTTATCTAATGCGCAGTCTCAAGAAGGCTTGCTAGACGCAGGGCAGCAGATCAATACATTGACGACCCAGAGTCCCGA GCTGGGCACGCAGACCGTGGTTACTGTCATTGGAGAGCACTCGCACGTACAAGTGGTGCGTAGTGGTGAACCATTGAGTC TGCTGGTTTCGCCCCAGGGCGTGGCGTTGGATGCGGTGGAGCGCACTTCACAGATGGCGCCGGATGCGCTCGGTGACCCA CTCATTGAGGAAGGATGGGAACCCTGGACGCGTGCCGCTCAGGGGATATTGGAATGGGTCGGCGCTCAGCCGGGACACCC GCGAAAGGATGCCGCCGCATCAACAACATCGACTGTAAACGCATTACTGTGTATGGGGCAGGGCGTGCTCAAACACTACC GACGTCGTGAAGATGCACCTGCCATGTTGCGTAGTGAACGCTTGCCTGATCCTCCTGCAGATTTTGAGGCACAGCTAATG GATTTCATCGATTTTAATGACACTGTACTGGCGAGCCGTTTTCGTGTCCGTGAGCGTGTGATGCGTGTTGAATCGGCGCT GTTCTCCGGCGTGCAGCACAGTGAGGAGGAGTGCCAGACTGATCTTTGGGCGACGCTGGCTCCGGTAGCGGTCGCCGAAA AGGCGGAGCAGATACGGTTACGTTTGTCTGAGGCGAATGACCGGGAGTTGCAGTTGCGTTTGCTGGAGAAGTTTCGTCAG GCCATTGAGCAGAGCGGTTCTGAACCTCCGGAGGATGAGGAGCTGCTGTTGCAGCAATTGGAGCTGGTATTGATCCGTCA TCCTGGGTTGCTACGAGTGGCCTACCGACGTTTCCGCCATGCTCAAGTCGCTGATGTCGCAGTGCCGCTGCCGGCTGAGT TGCATAGCGATATGCCTCTACAGAGGGCGCAGCGCGGGCTGTATGGGGTATTTCCACAGGGCCTCAATCAAGATGAAACT GCAGTGGCGCAGCAACTTGATGCAAGCCCATTGGTGCATTGGTGGCACCGTAATCCTGTACGCCGTCCCGAATCGGTGGC GCTGTATCGTTGGGACGATGGGGAAGGGTTTTACCCTGATTTTGTTGTGGCCATGACGCAGCGTAATACGCATGGACAGA TTGCATTGTTGGAAGTCAAAGGGGCTCATCTGTGGGGGGAGCCGCGGGAGGTAGAAAAAGCGGCTGCGGTCCATCCGGAG TATGGCCGGGTGTTTATCGTGGGCCGACAGCGCGGTGAGCGGGTGTTCCATCACTTGCGAGTATTAGAGCATCGTCTAGA AACAGACGGCGTTTTCACATTGGATCGGTTACGTCACGTATGA
Upstream 100 bases:
>100_bases AAAACATTTCTTCACCGCATGCCAGCATCACTGCCCGTTTGTGCAGAGTGTCTTGCTTGCTGGTTCCTCCCTCGCTGCGG TGATGCTTCGGAGATTAATC
Downstream 100 bases:
>100_bases GCTATCACGATTACCCCTTTCTCTCGCAGTGTTTTGAGGTCCGTCCGGGAATCAGGATGCGTTATCTGGACGAAGGTCCG CGTGACGCAGCGGTGGTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Superfamily II DNA/RNA Helicase; Type III Restriction Res Subunit Family
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MPATLKEFQETLCAGIVARFNQVRRLYEQLAGAPPEQWTQARCNDAVTVLCAPTGAGKTLIAVETMRRVSATGERVLWFW FAPFSGLVEQSRQVIAAQAPELDVFDLQSDRCWETVRSGGVFVVTWAAVAVRNTEGRRARTHGDSGMSLDVLLALAREEG VRIGCVVDEAHHTALSGHQARLFFQSVLAPDYALLMTATPRDADVMAFERATGYMVGQAAEWAMVSRFDAVQAGLLKYGV RMVRFIAQDGDAAQLIDFEHLALRQCAETHRMIKRLLADAGVALTPLMLVQVPDGRAAQDEARRFLTEQLHFDHEAVRIH TADEPDPALLSLANDPTVEVLIFKMAVALGFDAPRAFTLAALRGARDPAFGIQVIGRIVRKHALLQGRVTLPESLDYGYV FLSNAQSQEGLLDAGQQINTLTTQSPELGTQTVVTVIGEHSHVQVVRSGEPLSLLVSPQGVALDAVERTSQMAPDALGDP LIEEGWEPWTRAAQGILEWVGAQPGHPRKDAAASTTSTVNALLCMGQGVLKHYRRREDAPAMLRSERLPDPPADFEAQLM DFIDFNDTVLASRFRVRERVMRVESALFSGVQHSEEECQTDLWATLAPVAVAEKAEQIRLRLSEANDRELQLRLLEKFRQ AIEQSGSEPPEDEELLLQQLELVLIRHPGLLRVAYRRFRHAQVADVAVPLPAELHSDMPLQRAQRGLYGVFPQGLNQDET AVAQQLDASPLVHWWHRNPVRRPESVALYRWDDGEGFYPDFVVAMTQRNTHGQIALLEVKGAHLWGEPREVEKAAAVHPE YGRVFIVGRQRGERVFHHLRVLEHRLETDGVFTLDRLRHV
Sequences:
>Translated_840_residues MPATLKEFQETLCAGIVARFNQVRRLYEQLAGAPPEQWTQARCNDAVTVLCAPTGAGKTLIAVETMRRVSATGERVLWFW FAPFSGLVEQSRQVIAAQAPELDVFDLQSDRCWETVRSGGVFVVTWAAVAVRNTEGRRARTHGDSGMSLDVLLALAREEG VRIGCVVDEAHHTALSGHQARLFFQSVLAPDYALLMTATPRDADVMAFERATGYMVGQAAEWAMVSRFDAVQAGLLKYGV RMVRFIAQDGDAAQLIDFEHLALRQCAETHRMIKRLLADAGVALTPLMLVQVPDGRAAQDEARRFLTEQLHFDHEAVRIH TADEPDPALLSLANDPTVEVLIFKMAVALGFDAPRAFTLAALRGARDPAFGIQVIGRIVRKHALLQGRVTLPESLDYGYV FLSNAQSQEGLLDAGQQINTLTTQSPELGTQTVVTVIGEHSHVQVVRSGEPLSLLVSPQGVALDAVERTSQMAPDALGDP LIEEGWEPWTRAAQGILEWVGAQPGHPRKDAAASTTSTVNALLCMGQGVLKHYRRREDAPAMLRSERLPDPPADFEAQLM DFIDFNDTVLASRFRVRERVMRVESALFSGVQHSEEECQTDLWATLAPVAVAEKAEQIRLRLSEANDRELQLRLLEKFRQ AIEQSGSEPPEDEELLLQQLELVLIRHPGLLRVAYRRFRHAQVADVAVPLPAELHSDMPLQRAQRGLYGVFPQGLNQDET AVAQQLDASPLVHWWHRNPVRRPESVALYRWDDGEGFYPDFVVAMTQRNTHGQIALLEVKGAHLWGEPREVEKAAAVHPE YGRVFIVGRQRGERVFHHLRVLEHRLETDGVFTLDRLRHV >Mature_839_residues PATLKEFQETLCAGIVARFNQVRRLYEQLAGAPPEQWTQARCNDAVTVLCAPTGAGKTLIAVETMRRVSATGERVLWFWF APFSGLVEQSRQVIAAQAPELDVFDLQSDRCWETVRSGGVFVVTWAAVAVRNTEGRRARTHGDSGMSLDVLLALAREEGV RIGCVVDEAHHTALSGHQARLFFQSVLAPDYALLMTATPRDADVMAFERATGYMVGQAAEWAMVSRFDAVQAGLLKYGVR MVRFIAQDGDAAQLIDFEHLALRQCAETHRMIKRLLADAGVALTPLMLVQVPDGRAAQDEARRFLTEQLHFDHEAVRIHT ADEPDPALLSLANDPTVEVLIFKMAVALGFDAPRAFTLAALRGARDPAFGIQVIGRIVRKHALLQGRVTLPESLDYGYVF LSNAQSQEGLLDAGQQINTLTTQSPELGTQTVVTVIGEHSHVQVVRSGEPLSLLVSPQGVALDAVERTSQMAPDALGDPL IEEGWEPWTRAAQGILEWVGAQPGHPRKDAAASTTSTVNALLCMGQGVLKHYRRREDAPAMLRSERLPDPPADFEAQLMD FIDFNDTVLASRFRVRERVMRVESALFSGVQHSEEECQTDLWATLAPVAVAEKAEQIRLRLSEANDRELQLRLLEKFRQA IEQSGSEPPEDEELLLQQLELVLIRHPGLLRVAYRRFRHAQVADVAVPLPAELHSDMPLQRAQRGLYGVFPQGLNQDETA VAQQLDASPLVHWWHRNPVRRPESVALYRWDDGEGFYPDFVVAMTQRNTHGQIALLEVKGAHLWGEPREVEKAAAVHPEY GRVFIVGRQRGERVFHHLRVLEHRLETDGVFTLDRLRHV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93533; Mature: 93401
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATLKEFQETLCAGIVARFNQVRRLYEQLAGAPPEQWTQARCNDAVTVLCAPTGAGKTL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCEE IAVETMRRVSATGERVLWFWFAPFSGLVEQSRQVIAAQAPELDVFDLQSDRCWETVRSGG EHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHCCC VFVVTWAAVAVRNTEGRRARTHGDSGMSLDVLLALAREEGVRIGCVVDEAHHTALSGHQA EEEEEEEEHHEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECHHHHHHCCCHH RLFFQSVLAPDYALLMTATPRDADVMAFERATGYMVGQAAEWAMVSRFDAVQAGLLKYGV HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHH RMVRFIAQDGDAAQLIDFEHLALRQCAETHRMIKRLLADAGVALTPLMLVQVPDGRAAQD HHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCHH EARRFLTEQLHFDHEAVRIHTADEPDPALLSLANDPTVEVLIFKMAVALGFDAPRAFTLA HHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHH ALRGARDPAFGIQVIGRIVRKHALLQGRVTLPESLDYGYVFLSNAQSQEGLLDAGQQINT HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCHHCC LTTQSPELGTQTVVTVIGEHSHVQVVRSGEPLSLLVSPQGVALDAVERTSQMAPDALGDP CCCCCCCCCCHHHHHEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCHHCCCC LIEEGWEPWTRAAQGILEWVGAQPGHPRKDAAASTTSTVNALLCMGQGVLKHYRRREDAP HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH AMLRSERLPDPPADFEAQLMDFIDFNDTVLASRFRVRERVMRVESALFSGVQHSEEECQT HHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH DLWATLAPVAVAEKAEQIRLRLSEANDRELQLRLLEKFRQAIEQSGSEPPEDEELLLQQL HHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ELVLIRHPGLLRVAYRRFRHAQVADVAVPLPAELHSDMPLQRAQRGLYGVFPQGLNQDET HHHHHCCCCHHHHHHHHHHCCHHHHEECCCCHHHCCCCCHHHHHCCCCCCCCCCCCCHHH AVAQQLDASPLVHWWHRNPVRRPESVALYRWDDGEGFYPDFVVAMTQRNTHGQIALLEVK HHHHHCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEC GAHLWGEPREVEKAAAVHPEYGRVFIVGRQRGERVFHHLRVLEHRLETDGVFTLDRLRHV CCCCCCCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEHHHHHCC >Mature Secondary Structure PATLKEFQETLCAGIVARFNQVRRLYEQLAGAPPEQWTQARCNDAVTVLCAPTGAGKTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCEE IAVETMRRVSATGERVLWFWFAPFSGLVEQSRQVIAAQAPELDVFDLQSDRCWETVRSGG EHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHCCC VFVVTWAAVAVRNTEGRRARTHGDSGMSLDVLLALAREEGVRIGCVVDEAHHTALSGHQA EEEEEEEEHHEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECHHHHHHCCCHH RLFFQSVLAPDYALLMTATPRDADVMAFERATGYMVGQAAEWAMVSRFDAVQAGLLKYGV HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHH RMVRFIAQDGDAAQLIDFEHLALRQCAETHRMIKRLLADAGVALTPLMLVQVPDGRAAQD HHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCHH EARRFLTEQLHFDHEAVRIHTADEPDPALLSLANDPTVEVLIFKMAVALGFDAPRAFTLA HHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHH ALRGARDPAFGIQVIGRIVRKHALLQGRVTLPESLDYGYVFLSNAQSQEGLLDAGQQINT HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCHHCC LTTQSPELGTQTVVTVIGEHSHVQVVRSGEPLSLLVSPQGVALDAVERTSQMAPDALGDP CCCCCCCCCCHHHHHEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCHHCCCC LIEEGWEPWTRAAQGILEWVGAQPGHPRKDAAASTTSTVNALLCMGQGVLKHYRRREDAP HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH AMLRSERLPDPPADFEAQLMDFIDFNDTVLASRFRVRERVMRVESALFSGVQHSEEECQT HHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH DLWATLAPVAVAEKAEQIRLRLSEANDRELQLRLLEKFRQAIEQSGSEPPEDEELLLQQL HHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ELVLIRHPGLLRVAYRRFRHAQVADVAVPLPAELHSDMPLQRAQRGLYGVFPQGLNQDET HHHHHCCCCHHHHHHHHHHCCHHHHEECCCCHHHCCCCCHHHHHCCCCCCCCCCCCCHHH AVAQQLDASPLVHWWHRNPVRRPESVALYRWDDGEGFYPDFVVAMTQRNTHGQIALLEVK HHHHHCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEC GAHLWGEPREVEKAAAVHPEYGRVFIVGRQRGERVFHHLRVLEHRLETDGVFTLDRLRHV CCCCCCCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA