| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681423
Identifier: 182681423
GI number: 182681423
Start: 1030904
End: 1031797
Strand: Direct
Name: 182681423
Synonym: XfasM23_0873
Alternate gene names: NA
Gene position: 1030904-1031797 (Clockwise)
Preceding gene: 182681422
Following gene: 182681429
Centisome position: 40.66
GC content: 54.14
Gene sequence:
>894_bases ATGTTCATTACAGTGATAGCAGTGATTGTCGCGCTTGCCTTGGGGCATCTGATTCCCGTCCAGGTAGCAGCATTGCGTTC TTTCGACTGGTTCGGCCGCTGGCTGGCTTGGATTGGTCGTCTGCCCCAGACATATGACCTATGGCAGACCTCATACGGCT TGTGGTTAGCATTGGCACCACTCTTATTTGGGGTGATGATGCTGCAATGGTGGTTGGACGGTGTTTGGCATGGCCTGTTT TCATTGCTGTTTGGGGTGGCTGTGGTGAGTTGGACCTGGGGCCCCCGTGATCTGGATCGCGATGTTGAAGCAGTGATTGA TGCCAACGATGCGTCAGCTCGACACTTGGCAGTGAAAAAACTACAGGCAGCCGGGGGGAGCTTGTATGAGGATATCCCTT CGTTGGTTGAAGCTGTGGTGCTCAACGCATTACGACGTTGGTTGGCACTGTTGTTCTGGTTTCTGTTGCTGGGGCCTTTT GGTGCGGTCTTGTACCGATTGACTGCGCTGGCGGTGGAGAGTCGTTTGTCGGCCTATTTGTCTCCTGCTAACAGACGCGG GGCGAGTCGTTTTTTGTCGATGATGGAATGGCCAGTGGCGCAGCTAATGGCACTGTCGATGGCGCTTGTAGGTAACTTTG ATACCGTGTTTCGTGCTTGGCGTGAAGCAGGCGGCAACCGTTTTAATTTTGGGCTTGCTTTCCTCGGTGATGTGGCGCGC GCCAGCGTACGCGGCGAGGTGCGCGAGGAATTGGATGACTATGACAACTCTGGTTTAGTGTCGGTGTGGCGGCACCTGCC TGAGTTGCGCGATGCAATGAACCTGGTGTGGCGAGTGCTGTTGCTGTGGATCGCACTACTGATATTGCTAGTGATTGTTA GCTGCTTCACTTGA
Upstream 100 bases:
>100_bases GCGTAATGCATATCTGGCTGAATGTGCAGACAGCTATGAATCCTAGGAGATGGTTGTCGTAGATAGCTCAGCTAGAATCG TGCCAGGAGGAACTTCATCT
Downstream 100 bases:
>100_bases CTGTATTAGGCATACTGATCAAACACTTTATGTCTATCGTCACCTATCGGCGTTCCTGGTCGAGTACTTTCCAATCTTCT CAGCACCCTTGGAGTGGGAA
Product: signaling modulator of AmpD, AmpE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MFITVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAPLLFGVMMLQWWLDGVWHGLF SLLFGVAVVSWTWGPRDLDRDVEAVIDANDASARHLAVKKLQAAGGSLYEDIPSLVEAVVLNALRRWLALLFWFLLLGPF GAVLYRLTALAVESRLSAYLSPANRRGASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNFGLAFLGDVAR ASVRGEVREELDDYDNSGLVSVWRHLPELRDAMNLVWRVLLLWIALLILLVIVSCFT
Sequences:
>Translated_297_residues MFITVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAPLLFGVMMLQWWLDGVWHGLF SLLFGVAVVSWTWGPRDLDRDVEAVIDANDASARHLAVKKLQAAGGSLYEDIPSLVEAVVLNALRRWLALLFWFLLLGPF GAVLYRLTALAVESRLSAYLSPANRRGASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNFGLAFLGDVAR ASVRGEVREELDDYDNSGLVSVWRHLPELRDAMNLVWRVLLLWIALLILLVIVSCFT >Mature_297_residues MFITVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAPLLFGVMMLQWWLDGVWHGLF SLLFGVAVVSWTWGPRDLDRDVEAVIDANDASARHLAVKKLQAAGGSLYEDIPSLVEAVVLNALRRWLALLFWFLLLGPF GAVLYRLTALAVESRLSAYLSPANRRGASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNFGLAFLGDVAR ASVRGEVREELDDYDNSGLVSVWRHLPELRDAMNLVWRVLLLWIALLILLVIVSCFT
Specific function: Unknown
COG id: COG3725
COG function: function code V; Membrane protein required for beta-lactamase induction
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33462; Mature: 33462
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFITVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH LLFGVMMLQWWLDGVWHGLFSLLFGVAVVSWTWGPRDLDRDVEAVIDANDASARHLAVKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH LQAAGGSLYEDIPSLVEAVVLNALRRWLALLFWFLLLGPFGAVLYRLTALAVESRLSAYL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SPANRRGASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNFGLAFLGDVAR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHH ASVRGEVREELDDYDNSGLVSVWRHLPELRDAMNLVWRVLLLWIALLILLVIVSCFT HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFITVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH LLFGVMMLQWWLDGVWHGLFSLLFGVAVVSWTWGPRDLDRDVEAVIDANDASARHLAVKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH LQAAGGSLYEDIPSLVEAVVLNALRRWLALLFWFLLLGPFGAVLYRLTALAVESRLSAYL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SPANRRGASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNFGLAFLGDVAR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHH ASVRGEVREELDDYDNSGLVSVWRHLPELRDAMNLVWRVLLLWIALLILLVIVSCFT HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA