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The map label for this gene is clp [H]

Identifier: 182681345

GI number: 182681345

Start: 938279

End: 938968

Strand: Direct

Name: clp [H]

Synonym: XfasM23_0792

Alternate gene names: 182681345

Gene position: 938279-938968 (Clockwise)

Preceding gene: 182681343

Following gene: 182681346

Centisome position: 37.0

GC content: 52.61

Gene sequence:

>690_bases
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACAGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGACCCTGCTGGAACCC
TTTACTATGTTATCAGCGGGTCTATCAGCATCATCGCCGAGGAAGACGATCATCGTGAGCTGGTTCTTGGCTATTTCGGA
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGTGAAGTCATCTTACGTACACGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCTTGCACCAGCTGTTGCAAGGCAGTTTAGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGTATGCAGTTATCTAAGCGTTTATTGCTTACCACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTTGCGCGTCTGGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GTCTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Upstream 100 bases:

>100_bases
TATGCGGCAAAGTTCTCAGCAGCGAAATGCCATTGCTAGTGATGGTTTACGCGTGGCAATGAAGACCGCTAAGCTTAGCG
GATTGGAATGCGGACCTAAT

Downstream 100 bases:

>100_bases
CCCGGTTCCCATCAAGTGCACAGTGCTGGGCGATACTCGGTACCGTGCATGACCGGCGCGTTCGTCTGTGAATAGCTGTA
TACCGTTTCATACAGAGAAA

Product: cAMP-regulatory protein

Products: NA

Alternate protein names: CAP-like [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEDDHRELVLGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Sequences:

>Translated_229_residues
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEDDHRELVLGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR
>Mature_228_residues
TIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEDDHRELVLGYFGA
GEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVGD
RILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Specific function: Involved in the regulation of phytopathogenicity. It controls the production of extracellular enzymes, xanthan gum, and pigment either positively or negatively [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789756, Length=207, Percent_Identity=42.9951690821256, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 25512; Mature: 25381

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50042 CNMP_BINDING_3 ; PS00042 HTH_CRP_1 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISG
CCCCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC
SISIIAEEDDHRELVLGYFGAGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQL
CEEEEEECCCCCEEEEEECCCHHHHHHHCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHH
LQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVGDRILRTLHDLARDPEAMSHP
HHCHHCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCC
QGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR
CCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCEEEEEECC
>Mature Secondary Structure 
TIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISG
CCCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC
SISIIAEEDDHRELVLGYFGAGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQL
CEEEEEECCCCCEEEEEECCCHHHHHHHCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHH
LQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVGDRILRTLHDLARDPEAMSHP
HHCHHCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEHHHHHHHHHHHHHHCCCHHHCCC
QGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR
CCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170330; 1322886; 12024217 [H]