BacMap

Definition	Xylella fastidiosa M23 chromosome, complete genome.
Accession	NC_010577
Length	2,535,690

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The map label for this gene is 182681286

Identifier: 182681286

GI number: 182681286

Start: 860580

End: 861047

Strand: Direct

Name: 182681286

Synonym: XfasM23_0731

Alternate gene names: NA

Gene position: 860580-861047 (Clockwise)

Preceding gene: 182681279

Following gene: 182681287

Centisome position: 33.94

GC content: 50.0

Gene sequence:

>468_bases
ATGTCCCGTAGGATCGTCGCTCGCAAGTCCCGTATCCACGGCAACGGTGTGTTTGCTGTGGTGTCGATCCATCAGGGTGA
GCGCATTATTGAATATAAGGGGCGCATCCGTACGCATGCTGCGGTTGATGCCAATAGTCATGGCCACATTGAGAGTGGTC
ATACGTTTTTGTTTACGTTGAATGATGATTATGTGATTGATGCCAATGATGCTGGGAACATTGCGCGTTGGATCAATCAT
AGTTGTTCTCCGAATTGCGAGGCAGTGGTTGAGGAGGATACGGGCGGGAACCGACGTAAAGACAAGATATTTATCCAGGC
GATCCGTGATATCGCTTCTGGTGAGGAGCTGACTTATAACTATGGGATTGTGTTGGCAGAGCGCCATACGGCGCGACTGA
AAAAGATCTGGGCGTGTTTATGCGGTTCGGATCACTGTACTCACACGATGCTTCAGCCCAAGCGTTGA

Upstream 100 bases:

>100_bases
CGACTTTCCGTGTGTGTTGTATTGATGTGCTTTGGGTGCCAGAGTTGCTGTGTTGATATATCTAGTCTGCAATGCACATT
TTGTATAAAGGACGGTATTG

Downstream 100 bases:

>100_bases
AGGGTCAGGAAGGATTAATGTGGTCTTAAGGGTGGTTGATGGGTGTAGTTATCAGTCTACGTGATGTGTTTATTTTGTTT
TGAATACGTCGTAGCTCCAT

Product: nuclear protein SET

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSRRIVARKSRIHGNGVFAVVSIHQGERIIEYKGRIRTHAAVDANSHGHIESGHTFLFTLNDDYVIDANDAGNIARWINH
SCSPNCEAVVEEDTGGNRRKDKIFIQAIRDIASGEELTYNYGIVLAERHTARLKKIWACLCGSDHCTHTMLQPKR

Sequences:

>Translated_155_residues
MSRRIVARKSRIHGNGVFAVVSIHQGERIIEYKGRIRTHAAVDANSHGHIESGHTFLFTLNDDYVIDANDAGNIARWINH
SCSPNCEAVVEEDTGGNRRKDKIFIQAIRDIASGEELTYNYGIVLAERHTARLKKIWACLCGSDHCTHTMLQPKR
>Mature_154_residues
SRRIVARKSRIHGNGVFAVVSIHQGERIIEYKGRIRTHAAVDANSHGHIESGHTFLFTLNDDYVIDANDAGNIARWINHS
CSPNCEAVVEEDTGGNRRKDKIFIQAIRDIASGEELTYNYGIVLAERHTARLKKIWACLCGSDHCTHTMLQPKR

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI55741677, Length=144, Percent_Identity=35.4166666666667, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI56550039, Length=139, Percent_Identity=37.410071942446, Blast_Score=85, Evalue=2e-17,
Organism=Homo sapiens, GI7662046, Length=139, Percent_Identity=37.410071942446, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI210032580, Length=144, Percent_Identity=35.4166666666667, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI91718902, Length=143, Percent_Identity=36.3636363636364, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI156142199, Length=140, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI156142197, Length=140, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI148762969, Length=144, Percent_Identity=36.8055555555556, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI19923202, Length=121, Percent_Identity=35.5371900826446, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI19913358, Length=137, Percent_Identity=33.5766423357664, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI19913350, Length=137, Percent_Identity=33.5766423357664, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI19913348, Length=137, Percent_Identity=33.5766423357664, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI109633019, Length=137, Percent_Identity=33.5766423357664, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI21361095, Length=119, Percent_Identity=36.1344537815126, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI23510384, Length=119, Percent_Identity=36.1344537815126, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI19923586, Length=145, Percent_Identity=32.4137931034483, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI110349788, Length=135, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI27477095, Length=145, Percent_Identity=32.4137931034483, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI224465233, Length=150, Percent_Identity=30.6666666666667, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI13375930, Length=152, Percent_Identity=28.9473684210526, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI301171597, Length=152, Percent_Identity=28.9473684210526, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI301171588, Length=121, Percent_Identity=30.5785123966942, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI197313748, Length=135, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI13699811, Length=150, Percent_Identity=32, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI4507321, Length=113, Percent_Identity=33.6283185840708, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193210440, Length=148, Percent_Identity=39.1891891891892, Blast_Score=100, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17552316, Length=140, Percent_Identity=40, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17552320, Length=140, Percent_Identity=40, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17552318, Length=140, Percent_Identity=40, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565204, Length=164, Percent_Identity=31.0975609756098, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71993684, Length=135, Percent_Identity=32.5925925925926, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321911, Length=141, Percent_Identity=42.5531914893617, Blast_Score=94, Evalue=8e-21,
Organism=Drosophila melanogaster, GI62472551, Length=139, Percent_Identity=36.6906474820144, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17136558, Length=139, Percent_Identity=36.6906474820144, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI19550181, Length=139, Percent_Identity=36.6906474820144, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI19550184, Length=139, Percent_Identity=36.6906474820144, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17136556, Length=139, Percent_Identity=36.6906474820144, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571451, Length=145, Percent_Identity=37.9310344827586, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24639197, Length=145, Percent_Identity=37.9310344827586, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI221331070, Length=121, Percent_Identity=37.1900826446281, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24662251, Length=121, Percent_Identity=37.1900826446281, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24647050, Length=149, Percent_Identity=29.5302013422819, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161078181, Length=152, Percent_Identity=32.8947368421053, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24650756, Length=136, Percent_Identity=33.8235294117647, Blast_Score=66, Evalue=8e-12,
Organism=Drosophila melanogaster, GI281360813, Length=135, Percent_Identity=31.8518518518519, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641786, Length=135, Percent_Identity=31.8518518518519, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17436; Mature: 17305

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50280 SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRIVARKSRIHGNGVFAVVSIHQGERIIEYKGRIRTHAAVDANSHGHIESGHTFLFTL
CCCCEECCCCEECCCCEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCEECCCEEEEEE
NDDYVIDANDAGNIARWINHSCSPNCEAVVEEDTGGNRRKDKIFIQAIRDIASGEELTYN
CCCEEEECCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE
YGIVLAERHTARLKKIWACLCGSDHCTHTMLQPKR
EEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRRIVARKSRIHGNGVFAVVSIHQGERIIEYKGRIRTHAAVDANSHGHIESGHTFLFTL
CCCEECCCCEECCCCEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCEECCCEEEEEE
NDDYVIDANDAGNIARWINHSCSPNCEAVVEEDTGGNRRKDKIFIQAIRDIASGEELTYN
CCCEEEECCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE
YGIVLAERHTARLKKIWACLCGSDHCTHTMLQPKR
EEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA